Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14635

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
3,333,538	-		BPHYT_RS14630	0.68	+1.4
3,333,781	+		BPHYT_RS14630	0.87	+0.1
3,333,782	-		BPHYT_RS14630	0.87	+1.4
3,333,782	-		BPHYT_RS14630	0.87	-0.1
3,333,831	+				-0.6
3,333,831	+				+0.7
3,333,832	-				+0.5
3,333,832	-				+0.5
3,333,832	-				+0.7
3,333,983	+				-0.4
3,333,983	+				+0.3
3,333,983	+				+1.1
3,333,984	-				+0.8
3,333,984	-				-0.2
3,333,984	-				-1.2
3,333,984	-				+0.7
3,334,095	+				+0.4
3,334,095	+				-0.4
3,334,095	+				+0.2
3,334,096	-				-2.8
3,334,096	-				+0.3
3,334,096	-				-1.7
3,334,237	+				+1.1
3,334,380	-				-1.3
3,334,389	+				-0.1
3,334,390	-				+4.4
3,334,669	+		BPHYT_RS14635	0.33	+1.1
3,334,807	+		BPHYT_RS14635	0.53	+1.0
3,334,807	+		BPHYT_RS14635	0.53	+0.3
3,334,808	-		BPHYT_RS14635	0.53	-0.2
3,334,816	-		BPHYT_RS14635	0.54	+0.6
3,334,816	-		BPHYT_RS14635	0.54	+1.1
3,334,816	-		BPHYT_RS14635	0.54	-0.5
3,335,223	+				-1.6
3,335,224	-				-2.1
3,335,244	+				+0.7
3,335,279	+				-0.4
3,335,354	+				+0.8
3,335,380	+				+0.7
3,335,380	+				-2.8
3,335,380	+				+0.3
3,335,381	-				+0.6
3,335,381	-				-0.4
3,335,381	-				+0.2
3,335,381	-				+0.0
3,335,381	-				+0.6
3,335,510	+		BPHYT_RS14640	0.11	+0.2
3,335,511	-		BPHYT_RS14640	0.11	+0.3
3,335,511	-		BPHYT_RS14640	0.11	-1.4
3,335,511	-		BPHYT_RS14640	0.11	+0.8
3,335,512	+		BPHYT_RS14640	0.11	+0.5
3,335,512	+		BPHYT_RS14640	0.11	-0.9
3,335,561	+		BPHYT_RS14640	0.14	+0.7
3,335,562	-		BPHYT_RS14640	0.14	-1.7
3,335,771	+		BPHYT_RS14640	0.26	-1.2
3,335,772	-		BPHYT_RS14640	0.26	+0.6
3,336,053	+		BPHYT_RS14640	0.43	+1.1
3,336,078	-		BPHYT_RS14640	0.44	+0.9