Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11750

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11745 and BPHYT_RS11750 are separated by 31 nucleotidesBPHYT_RS11750 and BPHYT_RS11755 are separated by 1 nucleotides BPHYT_RS11745: BPHYT_RS11745 - (2Fe-2S)-binding protein, at 2,663,764 to 2,664,927 _RS11745 BPHYT_RS11750: BPHYT_RS11750 - spermidine/putrescine ABC transporter ATP-binding protein, at 2,664,959 to 2,666,140 _RS11750 BPHYT_RS11755: BPHYT_RS11755 - spermidine/putrescine ABC transporter substrate-binding protein, at 2,666,142 to 2,667,197 _RS11755 Position (kb) 2664 2665 2666 2667Strain fitness (log2 ratio) -1 0 1at 2664.242 kb on - strand, within BPHYT_RS11745at 2665.019 kb on + strandat 2665.220 kb on + strand, within BPHYT_RS11750at 2665.536 kb on - strand, within BPHYT_RS11750at 2666.183 kb on - strandat 2666.183 kb on - strandat 2666.283 kb on + strand, within BPHYT_RS11755at 2666.841 kb on + strand, within BPHYT_RS11755

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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2,664,242 - BPHYT_RS11745 0.41 +0.4
2,665,019 + +0.0
2,665,220 + BPHYT_RS11750 0.22 -1.7
2,665,536 - BPHYT_RS11750 0.49 +1.1
2,666,183 - -1.6
2,666,183 - +1.3
2,666,283 + BPHYT_RS11755 0.13 +0.1
2,666,841 + BPHYT_RS11755 0.66 +0.5

Or see this region's nucleotide sequence