Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11225

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
2,553,117	-		BPHYT_RS11220	0.44	-1.6
2,553,178	+		BPHYT_RS11220	0.50	+0.4
2,553,476	-		BPHYT_RS11220	0.81	+0.3
2,553,661	-				-1.6
2,553,661	-				-0.4
2,553,661	-				-0.6
2,553,661	-				-0.1
2,553,697	-				+0.2
2,553,703	-				-0.7
2,553,955	-				+1.4
2,554,100	+				+1.2
2,554,142	+		BPHYT_RS11225	0.13	-1.5
2,554,142	+		BPHYT_RS11225	0.13	-0.5
2,554,311	-		BPHYT_RS11225	0.30	-1.5
2,554,325	+		BPHYT_RS11225	0.31	-0.9
2,554,401	+		BPHYT_RS11225	0.39	+0.1
2,554,440	-		BPHYT_RS11225	0.43	+0.2
2,554,679	+		BPHYT_RS11225	0.68	-0.6
2,554,679	+		BPHYT_RS11225	0.68	+0.5
2,554,679	+		BPHYT_RS11225	0.68	+0.2
2,554,680	-		BPHYT_RS11225	0.68	-1.3
2,555,003	+				-0.4
2,555,036	+				+4.5
2,555,037	-				+0.3
2,555,042	-				-0.1
2,555,046	-				-1.2
2,555,094	+				-0.2
2,555,102	-				+1.5
2,555,130	-				+1.2
2,555,178	-				+0.7
2,555,186	+				-1.5
2,555,186	+				-0.5
2,555,206	-				-0.2
2,555,362	-		BPHYT_RS11230	0.33	-0.1
2,555,598	-		BPHYT_RS11230	0.83	-0.2
2,555,820	+				-0.6
2,555,821	-				-0.4
2,555,957	+		BPHYT_RS11235	0.60	+0.5