Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10670

Experiment: Phenylacetic 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS10660 and BPHYT_RS10665 are separated by 50 nucleotidesBPHYT_RS10665 and BPHYT_RS10670 are separated by 140 nucleotidesBPHYT_RS10670 and BPHYT_RS10675 are separated by 69 nucleotides BPHYT_RS10660: BPHYT_RS10660 - ferredoxin, at 2,428,064 to 2,429,038 _RS10660 BPHYT_RS10665: BPHYT_RS10665 - muconolactone delta-isomerase, at 2,429,089 to 2,429,379 _RS10665 BPHYT_RS10670: BPHYT_RS10670 - catechol 1,2-dioxygenase, at 2,429,520 to 2,430,428 _RS10670 BPHYT_RS10675: BPHYT_RS10675 - muconate cycloisomerase, at 2,430,498 to 2,431,655 _RS10675 Position (kb) 2429 2430 2431Strain fitness (log2 ratio) -1 0 1at 2429.008 kb on + strandat 2429.780 kb on + strand, within BPHYT_RS10670at 2431.177 kb on + strand, within BPHYT_RS10675

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
remove
2,429,008 + +0.0
2,429,780 + BPHYT_RS10670 0.29 -0.1
2,431,177 + BPHYT_RS10675 0.59 -1.4

Or see this region's nucleotide sequence