Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08085

Experiment: Phenylacetic 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS08080 and BPHYT_RS08085 are separated by 129 nucleotidesBPHYT_RS08085 and BPHYT_RS08090 are separated by 31 nucleotides BPHYT_RS08080: BPHYT_RS08080 - tRNA pseudouridine synthase B, at 1,843,440 to 1,844,375 _RS08080 BPHYT_RS08085: BPHYT_RS08085 - DSBA oxidoreductase, at 1,844,505 to 1,846,067 _RS08085 BPHYT_RS08090: BPHYT_RS08090 - hemolysin D, at 1,846,099 to 1,847,373 _RS08090 Position (kb) 1844 1845 1846 1847Strain fitness (log2 ratio) -2 -1 0 1 2at 1843.554 kb on + strand, within BPHYT_RS08080at 1843.667 kb on + strand, within BPHYT_RS08080at 1843.751 kb on - strand, within BPHYT_RS08080at 1843.824 kb on + strand, within BPHYT_RS08080at 1843.825 kb on - strand, within BPHYT_RS08080at 1843.857 kb on + strand, within BPHYT_RS08080at 1843.951 kb on + strand, within BPHYT_RS08080at 1843.983 kb on + strand, within BPHYT_RS08080at 1843.983 kb on + strand, within BPHYT_RS08080at 1843.983 kb on + strand, within BPHYT_RS08080at 1843.984 kb on - strand, within BPHYT_RS08080at 1843.984 kb on - strand, within BPHYT_RS08080at 1843.984 kb on - strand, within BPHYT_RS08080at 1843.984 kb on - strand, within BPHYT_RS08080at 1843.984 kb on - strand, within BPHYT_RS08080at 1843.984 kb on - strand, within BPHYT_RS08080at 1844.393 kb on + strandat 1844.394 kb on - strandat 1844.394 kb on - strandat 1844.468 kb on - strandat 1844.469 kb on + strandat 1844.474 kb on + strandat 1844.474 kb on + strandat 1844.475 kb on - strandat 1844.737 kb on + strand, within BPHYT_RS08085at 1844.737 kb on + strand, within BPHYT_RS08085at 1844.897 kb on + strand, within BPHYT_RS08085at 1844.898 kb on - strand, within BPHYT_RS08085at 1844.898 kb on - strand, within BPHYT_RS08085at 1844.898 kb on - strand, within BPHYT_RS08085at 1844.898 kb on - strand, within BPHYT_RS08085at 1844.952 kb on - strand, within BPHYT_RS08085at 1845.038 kb on + strand, within BPHYT_RS08085at 1845.044 kb on + strand, within BPHYT_RS08085at 1845.148 kb on + strand, within BPHYT_RS08085at 1845.264 kb on + strand, within BPHYT_RS08085at 1845.265 kb on - strand, within BPHYT_RS08085at 1845.658 kb on + strand, within BPHYT_RS08085at 1845.658 kb on + strand, within BPHYT_RS08085at 1845.658 kb on + strand, within BPHYT_RS08085at 1845.720 kb on + strand, within BPHYT_RS08085at 1845.721 kb on - strand, within BPHYT_RS08085at 1846.100 kb on + strandat 1846.101 kb on - strandat 1846.101 kb on - strandat 1846.101 kb on - strandat 1846.101 kb on - strandat 1846.220 kb on + strandat 1846.245 kb on - strand, within BPHYT_RS08090at 1846.251 kb on + strand, within BPHYT_RS08090at 1846.497 kb on - strand, within BPHYT_RS08090at 1846.549 kb on + strand, within BPHYT_RS08090at 1846.549 kb on + strand, within BPHYT_RS08090at 1846.549 kb on + strand, within BPHYT_RS08090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
remove
1,843,554 + BPHYT_RS08080 0.12 -0.1
1,843,667 + BPHYT_RS08080 0.24 +0.5
1,843,751 - BPHYT_RS08080 0.33 +0.3
1,843,824 + BPHYT_RS08080 0.41 +1.2
1,843,825 - BPHYT_RS08080 0.41 +1.2
1,843,857 + BPHYT_RS08080 0.45 -1.4
1,843,951 + BPHYT_RS08080 0.55 -0.2
1,843,983 + BPHYT_RS08080 0.58 +0.4
1,843,983 + BPHYT_RS08080 0.58 -0.1
1,843,983 + BPHYT_RS08080 0.58 +0.2
1,843,984 - BPHYT_RS08080 0.58 -0.2
1,843,984 - BPHYT_RS08080 0.58 +0.9
1,843,984 - BPHYT_RS08080 0.58 +1.5
1,843,984 - BPHYT_RS08080 0.58 +0.7
1,843,984 - BPHYT_RS08080 0.58 -0.0
1,843,984 - BPHYT_RS08080 0.58 +0.1
1,844,393 + +0.9
1,844,394 - -0.5
1,844,394 - -0.6
1,844,468 - -0.7
1,844,469 + -1.5
1,844,474 + +0.5
1,844,474 + -0.8
1,844,475 - -1.5
1,844,737 + BPHYT_RS08085 0.15 +0.2
1,844,737 + BPHYT_RS08085 0.15 -1.3
1,844,897 + BPHYT_RS08085 0.25 +2.7
1,844,898 - BPHYT_RS08085 0.25 +0.6
1,844,898 - BPHYT_RS08085 0.25 -0.8
1,844,898 - BPHYT_RS08085 0.25 -0.7
1,844,898 - BPHYT_RS08085 0.25 -0.6
1,844,952 - BPHYT_RS08085 0.29 +0.3
1,845,038 + BPHYT_RS08085 0.34 +0.0
1,845,044 + BPHYT_RS08085 0.34 +2.1
1,845,148 + BPHYT_RS08085 0.41 -2.4
1,845,264 + BPHYT_RS08085 0.49 +0.3
1,845,265 - BPHYT_RS08085 0.49 -0.7
1,845,658 + BPHYT_RS08085 0.74 +0.3
1,845,658 + BPHYT_RS08085 0.74 +1.1
1,845,658 + BPHYT_RS08085 0.74 -0.4
1,845,720 + BPHYT_RS08085 0.78 +0.1
1,845,721 - BPHYT_RS08085 0.78 +0.5
1,846,100 + -0.7
1,846,101 - +0.3
1,846,101 - -0.0
1,846,101 - +1.1
1,846,101 - +2.5
1,846,220 + -0.2
1,846,245 - BPHYT_RS08090 0.11 +0.5
1,846,251 + BPHYT_RS08090 0.12 +2.3
1,846,497 - BPHYT_RS08090 0.31 +0.0
1,846,549 + BPHYT_RS08090 0.35 -2.3
1,846,549 + BPHYT_RS08090 0.35 -0.2
1,846,549 + BPHYT_RS08090 0.35 -0.7

Or see this region's nucleotide sequence