Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07705

Experiment: Phenylacetic 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS07700 and BPHYT_RS07705 overlap by 4 nucleotidesBPHYT_RS07705 and BPHYT_RS07710 are separated by 2 nucleotides BPHYT_RS07700: BPHYT_RS07700 - arginine N-succinyltransferase, at 1,751,725 to 1,752,783 _RS07700 BPHYT_RS07705: BPHYT_RS07705 - arginine succinyltransferase, at 1,752,780 to 1,753,820 _RS07705 BPHYT_RS07710: BPHYT_RS07710 - succinylglutamate-semialdehyde dehydrogenase, at 1,753,823 to 1,755,286 _RS07710 Position (kb) 1752 1753 1754Strain fitness (log2 ratio) -3 -2 -1 0 1at 1752.166 kb on + strand, within BPHYT_RS07700at 1753.045 kb on - strand, within BPHYT_RS07705at 1753.330 kb on - strand, within BPHYT_RS07705at 1753.356 kb on + strand, within BPHYT_RS07705at 1753.416 kb on + strand, within BPHYT_RS07705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
remove
1,752,166 + BPHYT_RS07700 0.42 -1.5
1,753,045 - BPHYT_RS07705 0.25 +0.6
1,753,330 - BPHYT_RS07705 0.53 -3.4
1,753,356 + BPHYT_RS07705 0.55 -2.1
1,753,416 + BPHYT_RS07705 0.61 -1.3

Or see this region's nucleotide sequence