Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07570

Experiment: Phenylacetic 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07565 and BPHYT_RS07570 are separated by 17 nucleotidesBPHYT_RS07570 and BPHYT_RS07575 are separated by 85 nucleotides BPHYT_RS07565: BPHYT_RS07565 - urocanate hydratase, at 1,719,514 to 1,721,202 _RS07565 BPHYT_RS07570: BPHYT_RS07570 - hypothetical protein, at 1,721,220 to 1,721,846 _RS07570 BPHYT_RS07575: BPHYT_RS07575 - imidazolonepropionase, at 1,721,932 to 1,723,155 _RS07575 Position (kb) 1721 1722Strain fitness (log2 ratio) -1 0 1 2 3at 1720.573 kb on + strand, within BPHYT_RS07565at 1720.574 kb on - strand, within BPHYT_RS07565at 1720.574 kb on - strand, within BPHYT_RS07565at 1720.728 kb on + strand, within BPHYT_RS07565at 1721.636 kb on - strand, within BPHYT_RS07570at 1722.197 kb on - strand, within BPHYT_RS07575at 1722.484 kb on + strand, within BPHYT_RS07575at 1722.485 kb on - strand, within BPHYT_RS07575at 1722.486 kb on + strand, within BPHYT_RS07575at 1722.790 kb on + strand, within BPHYT_RS07575at 1722.790 kb on + strand, within BPHYT_RS07575at 1722.791 kb on - strand, within BPHYT_RS07575at 1722.791 kb on - strand, within BPHYT_RS07575at 1722.838 kb on + strand, within BPHYT_RS07575

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C)
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1,720,573 + BPHYT_RS07565 0.63 +0.1
1,720,574 - BPHYT_RS07565 0.63 -0.0
1,720,574 - BPHYT_RS07565 0.63 +0.5
1,720,728 + BPHYT_RS07565 0.72 +0.6
1,721,636 - BPHYT_RS07570 0.66 -1.4
1,722,197 - BPHYT_RS07575 0.22 +0.4
1,722,484 + BPHYT_RS07575 0.45 +1.3
1,722,485 - BPHYT_RS07575 0.45 +0.4
1,722,486 + BPHYT_RS07575 0.45 -0.1
1,722,790 + BPHYT_RS07575 0.70 -1.0
1,722,790 + BPHYT_RS07575 0.70 -0.6
1,722,791 - BPHYT_RS07575 0.70 +1.3
1,722,791 - BPHYT_RS07575 0.70 +3.1
1,722,838 + BPHYT_RS07575 0.74 -0.5

Or see this region's nucleotide sequence