Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07000

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
1,581,589	-		BPHYT_RS06995	0.88	-0.2
1,581,589	-				+1.4
1,581,699	-				+0.1
1,581,699	-				-0.2
1,581,699	-				+0.2
1,581,713	-				+0.1
1,581,720	-				+0.2
1,581,761	+				-3.9
1,581,771	-				+1.4
1,581,873	-				-0.5
1,581,911	-				-1.6
1,581,911	-				+0.4
1,582,003	+				-0.2
1,582,003	+				-2.5
1,582,004	-				+1.5
1,582,004	-				+0.2
1,582,004	-				-0.8
1,582,065	+				+0.1
1,582,065	+				-0.1
1,582,065	+				+0.8
1,582,065	+				-2.5
1,582,066	-				+1.4
1,582,421	+				-0.1
1,582,465	-		BPHYT_RS07000	0.11	-0.9
1,582,465	-		BPHYT_RS07000	0.11	-0.4
1,582,465	-		BPHYT_RS07000	0.11	+1.4
1,582,500	+		BPHYT_RS07000	0.13	-0.4
1,582,500	+		BPHYT_RS07000	0.13	-0.9
1,582,500	+		BPHYT_RS07000	0.13	+1.2
1,582,593	+		BPHYT_RS07000	0.17	-1.7
1,582,594	-		BPHYT_RS07000	0.17	-1.9
1,582,594	-		BPHYT_RS07000	0.17	-0.2
1,582,677	+		BPHYT_RS07000	0.22	-0.9
1,582,678	-		BPHYT_RS07000	0.22	-1.5
1,582,678	-		BPHYT_RS07000	0.22	-1.1
1,582,678	-		BPHYT_RS07000	0.22	-0.4
1,582,678	-		BPHYT_RS07000	0.22	+0.5
1,582,678	-		BPHYT_RS07000	0.22	-0.0
1,582,680	-		BPHYT_RS07000	0.22	+0.6
1,582,923	+		BPHYT_RS07000	0.34	+0.2
1,582,924	-		BPHYT_RS07000	0.34	-3.0
1,583,052	+		BPHYT_RS07000	0.41	+0.4
1,583,052	+		BPHYT_RS07000	0.41	+0.1
1,583,052	+		BPHYT_RS07000	0.41	-0.1
1,583,053	-		BPHYT_RS07000	0.41	-0.8
1,583,208	+		BPHYT_RS07000	0.48	+1.0
1,583,208	+		BPHYT_RS07000	0.48	+0.1
1,583,218	-		BPHYT_RS07000	0.49	+2.1
1,583,218	-		BPHYT_RS07000	0.49	-0.4
1,583,218	-		BPHYT_RS07000	0.49	-0.1
1,583,328	+		BPHYT_RS07000	0.54	-2.5
1,583,328	+		BPHYT_RS07000	0.54	-0.2
1,583,329	-		BPHYT_RS07000	0.55	-1.3
1,583,329	-		BPHYT_RS07000	0.55	-1.0
1,583,400	+		BPHYT_RS07000	0.58	+0.3
1,583,401	-		BPHYT_RS07000	0.58	-0.0
1,583,511	-		BPHYT_RS07000	0.64	+0.5
1,583,739	+		BPHYT_RS07000	0.75	-0.3
1,583,739	+		BPHYT_RS07000	0.75	-0.2
1,583,739	+		BPHYT_RS07000	0.75	-2.4
1,583,740	-		BPHYT_RS07000	0.75	+0.4
1,583,740	-		BPHYT_RS07000	0.75	+0.1
1,583,740	-		BPHYT_RS07000	0.75	-0.7
1,584,229	-				-0.3
1,584,263	+				+1.9
1,584,371	+				-0.0
1,584,371	+				+0.4
1,584,472	-				+0.9
1,584,597	+		BPHYT_RS07005	0.51	-2.0
1,584,648	+		BPHYT_RS07005	0.68	-0.1
1,584,649	-		BPHYT_RS07005	0.68	+1.2
1,584,649	-		BPHYT_RS07005	0.68	+0.4
1,584,829	+				+2.0
1,584,830	-				-1.5
1,584,830	-				-1.4
1,584,830	-				+0.6
1,584,880	+				+0.4
1,584,881	-				+0.7
1,584,910	+				-3.5
1,584,911	-				+0.4
1,584,911	-				-0.4
1,585,058	-		BPHYT_RS07010	0.15	+1.9
1,585,058	-		BPHYT_RS07010	0.15	+0.6
1,585,058	-		BPHYT_RS07010	0.15	-0.9