Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06495 and BPHYT_RS06500 are separated by 32 nucleotides BPHYT_RS06500 and BPHYT_RS06505 are separated by 2 nucleotides BPHYT_RS06505 and BPHYT_RS06510 are separated by 205 nucleotides BPHYT_RS06510 and BPHYT_RS06515 are separated by 170 nucleotides
BPHYT_RS06495: BPHYT_RS06495 - glucose-1-dehydrogenase, at 1,477,407 to 1,478,153
_RS06495
BPHYT_RS06500: BPHYT_RS06500 - LOG family protein, at 1,478,186 to 1,478,770
_RS06500
BPHYT_RS06505: BPHYT_RS06505 - TetR family transcriptional regulator, at 1,478,773 to 1,479,498
_RS06505
BPHYT_RS06510: BPHYT_RS06510 - DeoR faimly transcriptional regulator, at 1,479,704 to 1,480,192
_RS06510
BPHYT_RS06515: BPHYT_RS06515 - GDP-mannose-dependent alpha-mannosyltransferase, at 1,480,363 to 1,481,394
_RS06515
Position (kb) 1478
1479
1480 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1477.804 kb on + strand, within BPHYT_RS06495 at 1477.805 kb on - strand, within BPHYT_RS06495 at 1478.356 kb on - strand, within BPHYT_RS06500 at 1478.369 kb on - strand, within BPHYT_RS06500 at 1478.718 kb on + strand at 1478.719 kb on - strand at 1478.751 kb on + strand at 1478.752 kb on - strand at 1478.831 kb on + strand at 1478.999 kb on + strand, within BPHYT_RS06505 at 1479.011 kb on + strand, within BPHYT_RS06505 at 1479.012 kb on - strand, within BPHYT_RS06505 at 1479.044 kb on - strand, within BPHYT_RS06505 at 1479.230 kb on + strand, within BPHYT_RS06505 at 1479.230 kb on + strand, within BPHYT_RS06505 at 1479.230 kb on + strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.239 kb on + strand, within BPHYT_RS06505 at 1479.362 kb on + strand, within BPHYT_RS06505 at 1479.363 kb on - strand, within BPHYT_RS06505 at 1479.363 kb on - strand, within BPHYT_RS06505 at 1479.608 kb on - strand at 1479.608 kb on - strand at 1479.611 kb on - strand at 1479.683 kb on - strand at 1480.090 kb on - strand, within BPHYT_RS06510 at 1480.090 kb on - strand, within BPHYT_RS06510
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 1,477,804 + BPHYT_RS06495 0.53 +0.3 1,477,805 - BPHYT_RS06495 0.53 +0.3 1,478,356 - BPHYT_RS06500 0.29 -3.1 1,478,369 - BPHYT_RS06500 0.31 +0.7 1,478,718 + +1.4 1,478,719 - -1.0 1,478,751 + -1.3 1,478,752 - -0.6 1,478,831 + -3.0 1,478,999 + BPHYT_RS06505 0.31 -1.9 1,479,011 + BPHYT_RS06505 0.33 -0.6 1,479,012 - BPHYT_RS06505 0.33 -1.3 1,479,044 - BPHYT_RS06505 0.37 -1.1 1,479,230 + BPHYT_RS06505 0.63 +0.0 1,479,230 + BPHYT_RS06505 0.63 -0.0 1,479,230 + BPHYT_RS06505 0.63 +0.6 1,479,231 - BPHYT_RS06505 0.63 +0.0 1,479,231 - BPHYT_RS06505 0.63 +0.4 1,479,231 - BPHYT_RS06505 0.63 +0.2 1,479,231 - BPHYT_RS06505 0.63 -0.6 1,479,231 - BPHYT_RS06505 0.63 -2.0 1,479,231 - BPHYT_RS06505 0.63 -2.0 1,479,231 - BPHYT_RS06505 0.63 -0.5 1,479,231 - BPHYT_RS06505 0.63 +1.6 1,479,231 - BPHYT_RS06505 0.63 -0.9 1,479,239 + BPHYT_RS06505 0.64 +0.7 1,479,362 + BPHYT_RS06505 0.81 -1.7 1,479,363 - BPHYT_RS06505 0.81 -0.9 1,479,363 - BPHYT_RS06505 0.81 -1.7 1,479,608 - -1.4 1,479,608 - -0.2 1,479,611 - -0.0 1,479,683 - -0.4 1,480,090 - BPHYT_RS06510 0.79 -0.2 1,480,090 - BPHYT_RS06510 0.79 -0.2
Or see this region's nucleotide sequence