Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05950

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
1,351,878	+		BPHYT_RS05945	0.57	-0.5
1,351,899	+		BPHYT_RS05945	0.59	+0.4
1,351,899	+		BPHYT_RS05945	0.59	-2.1
1,351,900	-		BPHYT_RS05945	0.59	+0.2
1,351,972	+		BPHYT_RS05945	0.65	-0.8
1,351,975	-		BPHYT_RS05945	0.65	+0.6
1,352,064	+		BPHYT_RS05945	0.72	-1.8
1,352,262	+		BPHYT_RS05945	0.89	-1.3
1,352,428	+				+0.7
1,353,288	-		BPHYT_RS05950	0.31	+1.1
1,353,288	-		BPHYT_RS05950	0.31	-0.5
1,353,342	+		BPHYT_RS05950	0.33	-0.1
1,353,444	+		BPHYT_RS05950	0.37	-0.4
1,353,444	+		BPHYT_RS05950	0.37	-0.4
1,353,474	+		BPHYT_RS05950	0.39	-0.1
1,353,474	+		BPHYT_RS05950	0.39	-0.9
1,353,475	-		BPHYT_RS05950	0.39	+2.7
1,353,475	-		BPHYT_RS05950	0.39	-0.0
1,353,475	-		BPHYT_RS05950	0.39	+1.1
1,354,023	+		BPHYT_RS05950	0.62	-0.7
1,354,023	+		BPHYT_RS05950	0.62	+0.3
1,354,023	+		BPHYT_RS05950	0.62	-0.0
1,354,024	-		BPHYT_RS05950	0.62	+0.1
1,354,152	+		BPHYT_RS05950	0.67	+0.1
1,354,153	-		BPHYT_RS05950	0.67	+0.5
1,354,153	-		BPHYT_RS05950	0.67	-1.5
1,354,306	-		BPHYT_RS05950	0.74	-0.7
1,354,324	-		BPHYT_RS05950	0.75	-2.2
1,354,442	-		BPHYT_RS05950	0.80	-0.2
1,354,443	+		BPHYT_RS05950	0.80	+1.5
1,354,443	+		BPHYT_RS05950	0.80	-0.5
1,354,443	+		BPHYT_RS05950	0.80	+1.0
1,354,443	+		BPHYT_RS05950	0.80	-0.3
1,354,443	+		BPHYT_RS05950	0.80	-3.2
1,354,443	+		BPHYT_RS05950	0.80	+0.5
1,354,443	+		BPHYT_RS05950	0.80	+0.2
1,354,444	-		BPHYT_RS05950	0.80	-0.1
1,354,444	-		BPHYT_RS05950	0.80	-0.2
1,354,444	-		BPHYT_RS05950	0.80	+0.4
1,354,445	+		BPHYT_RS05950	0.80	-0.5
1,354,445	+		BPHYT_RS05950	0.80	-0.7
1,354,445	+		BPHYT_RS05950	0.80	+0.2
1,354,445	+		BPHYT_RS05950	0.80	+0.2
1,354,446	-		BPHYT_RS05950	0.80	-1.3
1,354,667	-		BPHYT_RS05950	0.89	-0.7
1,354,818	-				-0.0
1,355,032	+				+0.1
1,355,033	-				+0.7
1,355,033	-				+1.2
1,355,072	+				+1.5
1,355,082	+				+0.1
1,355,083	-				+0.8
1,355,085	+				-1.1
1,355,086	-				-1.5
1,355,086	-				+0.2
1,355,089	+				+0.5
1,355,089	+				+0.4
1,355,090	-				-0.0
1,355,090	-				+1.0
1,355,090	-				+0.4
1,355,128	+				-0.4
1,355,128	+				+0.4
1,355,304	+				-4.1
1,355,305	-				+0.5
1,355,543	-		BPHYT_RS05955	0.15	-1.0
1,355,763	+		BPHYT_RS05955	0.39	-0.4
1,355,865	+		BPHYT_RS05955	0.51	-0.6