Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04925 and BPHYT_RS04930 are separated by 202 nucleotides BPHYT_RS04930 and BPHYT_RS04935 are separated by 4 nucleotides BPHYT_RS04935 and BPHYT_RS04940 are separated by 72 nucleotides BPHYT_RS04940 and BPHYT_RS04945 are separated by 22 nucleotides
BPHYT_RS04925: BPHYT_RS04925 - pantothenate synthetase, at 1,130,873 to 1,131,706
_RS04925
BPHYT_RS04930: BPHYT_RS04930 - segregation and condensation protein A, at 1,131,909 to 1,132,784
_RS04930
BPHYT_RS04935: BPHYT_RS04935 - hypothetical protein, at 1,132,789 to 1,132,974
_RS04935
BPHYT_RS04940: BPHYT_RS04940 - hypothetical protein, at 1,133,047 to 1,133,277
_RS04940
BPHYT_RS04945: BPHYT_RS04945 - membrane protein, at 1,133,300 to 1,135,135
_RS04945
Position (kb) 1131
1132
1133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1131.818 kb on - strand at 1131.923 kb on - strand at 1133.049 kb on - strand at 1133.124 kb on + strand, within BPHYT_RS04940 at 1133.234 kb on - strand, within BPHYT_RS04940 at 1133.234 kb on - strand, within BPHYT_RS04940 at 1133.234 kb on - strand, within BPHYT_RS04940 at 1133.376 kb on + strand at 1133.469 kb on - strand at 1133.633 kb on + strand, within BPHYT_RS04945 at 1133.634 kb on - strand, within BPHYT_RS04945 at 1133.634 kb on - strand, within BPHYT_RS04945 at 1133.665 kb on + strand, within BPHYT_RS04945
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 1,131,818 - -0.3 1,131,923 - +0.6 1,133,049 - +0.5 1,133,124 + BPHYT_RS04940 0.33 -0.3 1,133,234 - BPHYT_RS04940 0.81 -2.8 1,133,234 - BPHYT_RS04940 0.81 +1.9 1,133,234 - BPHYT_RS04940 0.81 +0.6 1,133,376 + -0.5 1,133,469 - +0.5 1,133,633 + BPHYT_RS04945 0.18 -0.9 1,133,634 - BPHYT_RS04945 0.18 -0.4 1,133,634 - BPHYT_RS04945 0.18 +0.3 1,133,665 + BPHYT_RS04945 0.20 +2.0
Or see this region's nucleotide sequence