Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04245 and BPHYT_RS04250 are separated by 97 nucleotides BPHYT_RS04250 and BPHYT_RS04255 are separated by 49 nucleotides BPHYT_RS04255 and BPHYT_RS04260 are separated by 193 nucleotides
BPHYT_RS04245: BPHYT_RS04245 - dihydroorotase, at 972,638 to 973,915
_RS04245
BPHYT_RS04250: BPHYT_RS04250 - glycerol acyltransferase, at 974,013 to 974,858
_RS04250
BPHYT_RS04255: BPHYT_RS04255 - diadenosine tetraphosphatase, at 974,908 to 975,786
_RS04255
BPHYT_RS04260: BPHYT_RS04260 - GDP-6-deoxy-D-lyxo-4-hexulose reductase, at 975,980 to 976,891
_RS04260
Position (kb) 974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 973.931 kb on + strand at 973.931 kb on + strand at 973.932 kb on - strand at 973.949 kb on + strand at 973.950 kb on - strand at 973.952 kb on - strand at 973.952 kb on - strand at 974.031 kb on - strand at 974.244 kb on + strand, within BPHYT_RS04250 at 974.244 kb on + strand, within BPHYT_RS04250 at 974.244 kb on + strand, within BPHYT_RS04250 at 974.244 kb on + strand, within BPHYT_RS04250 at 974.244 kb on + strand, within BPHYT_RS04250 at 974.244 kb on + strand, within BPHYT_RS04250 at 974.244 kb on + strand, within BPHYT_RS04250 at 974.244 kb on + strand, within BPHYT_RS04250 at 974.244 kb on + strand, within BPHYT_RS04250 at 974.245 kb on - strand, within BPHYT_RS04250 at 974.245 kb on - strand, within BPHYT_RS04250 at 974.245 kb on - strand, within BPHYT_RS04250 at 974.279 kb on - strand, within BPHYT_RS04250 at 974.538 kb on + strand, within BPHYT_RS04250 at 974.538 kb on + strand, within BPHYT_RS04250 at 974.538 kb on + strand, within BPHYT_RS04250 at 974.539 kb on - strand, within BPHYT_RS04250 at 974.539 kb on - strand, within BPHYT_RS04250 at 974.577 kb on + strand, within BPHYT_RS04250 at 974.577 kb on + strand, within BPHYT_RS04250 at 974.578 kb on - strand, within BPHYT_RS04250 at 974.578 kb on - strand, within BPHYT_RS04250 at 974.579 kb on + strand, within BPHYT_RS04250 at 974.645 kb on + strand, within BPHYT_RS04250 at 974.645 kb on + strand, within BPHYT_RS04250 at 974.646 kb on - strand, within BPHYT_RS04250 at 974.649 kb on + strand, within BPHYT_RS04250 at 974.649 kb on + strand, within BPHYT_RS04250 at 974.650 kb on - strand, within BPHYT_RS04250 at 974.650 kb on - strand, within BPHYT_RS04250 at 974.650 kb on - strand, within BPHYT_RS04250 at 974.650 kb on - strand, within BPHYT_RS04250 at 974.650 kb on - strand, within BPHYT_RS04250 at 974.868 kb on + strand at 974.868 kb on + strand at 974.868 kb on + strand at 974.909 kb on + strand at 974.909 kb on + strand at 974.909 kb on + strand at 974.909 kb on - strand at 974.910 kb on - strand at 974.910 kb on - strand at 974.910 kb on - strand at 975.477 kb on + strand, within BPHYT_RS04255 at 975.771 kb on + strand at 975.772 kb on - strand at 975.772 kb on - strand at 975.772 kb on - strand at 975.809 kb on + strand at 975.809 kb on + strand at 975.857 kb on + strand at 975.867 kb on + strand at 975.867 kb on + strand at 975.867 kb on + strand at 975.868 kb on - strand at 975.868 kb on - strand at 975.868 kb on - strand at 976.006 kb on + strand at 976.013 kb on - strand at 976.196 kb on + strand, within BPHYT_RS04260 at 976.197 kb on - strand, within BPHYT_RS04260 at 976.228 kb on - strand, within BPHYT_RS04260 at 976.353 kb on - strand, within BPHYT_RS04260 at 976.496 kb on + strand, within BPHYT_RS04260 at 976.497 kb on - strand, within BPHYT_RS04260 at 976.498 kb on + strand, within BPHYT_RS04260 at 976.499 kb on - strand, within BPHYT_RS04260 at 976.619 kb on + strand, within BPHYT_RS04260 at 976.634 kb on + strand, within BPHYT_RS04260 at 976.634 kb on + strand, within BPHYT_RS04260 at 976.635 kb on - strand, within BPHYT_RS04260
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 973,931 + +0.0 973,931 + +0.7 973,932 - +0.6 973,949 + +1.3 973,950 - +1.3 973,952 - -0.8 973,952 - -0.2 974,031 - -0.5 974,244 + BPHYT_RS04250 0.27 -0.7 974,244 + BPHYT_RS04250 0.27 +0.7 974,244 + BPHYT_RS04250 0.27 +0.5 974,244 + BPHYT_RS04250 0.27 +1.0 974,244 + BPHYT_RS04250 0.27 +0.0 974,244 + BPHYT_RS04250 0.27 -0.1 974,244 + BPHYT_RS04250 0.27 +2.9 974,244 + BPHYT_RS04250 0.27 -1.5 974,244 + BPHYT_RS04250 0.27 -2.9 974,245 - BPHYT_RS04250 0.27 -0.3 974,245 - BPHYT_RS04250 0.27 +0.1 974,245 - BPHYT_RS04250 0.27 +0.3 974,279 - BPHYT_RS04250 0.31 -1.6 974,538 + BPHYT_RS04250 0.62 -1.2 974,538 + BPHYT_RS04250 0.62 +1.3 974,538 + BPHYT_RS04250 0.62 -0.6 974,539 - BPHYT_RS04250 0.62 -1.7 974,539 - BPHYT_RS04250 0.62 -0.6 974,577 + BPHYT_RS04250 0.67 +0.4 974,577 + BPHYT_RS04250 0.67 -0.4 974,578 - BPHYT_RS04250 0.67 +0.1 974,578 - BPHYT_RS04250 0.67 +1.0 974,579 + BPHYT_RS04250 0.67 +0.2 974,645 + BPHYT_RS04250 0.75 -0.4 974,645 + BPHYT_RS04250 0.75 -1.4 974,646 - BPHYT_RS04250 0.75 -1.7 974,649 + BPHYT_RS04250 0.75 +0.3 974,649 + BPHYT_RS04250 0.75 +0.5 974,650 - BPHYT_RS04250 0.75 -0.5 974,650 - BPHYT_RS04250 0.75 +2.6 974,650 - BPHYT_RS04250 0.75 +1.0 974,650 - BPHYT_RS04250 0.75 +0.6 974,650 - BPHYT_RS04250 0.75 -0.7 974,868 + -0.8 974,868 + +0.5 974,868 + -2.0 974,909 + +0.1 974,909 + -0.2 974,909 + +0.4 974,909 - +0.3 974,910 - -0.4 974,910 - +0.1 974,910 - +1.0 975,477 + BPHYT_RS04255 0.65 -2.3 975,771 + +0.1 975,772 - +1.5 975,772 - -1.9 975,772 - +0.9 975,809 + -3.3 975,809 + -1.3 975,857 + +0.6 975,867 + +0.5 975,867 + -0.7 975,867 + -0.5 975,868 - -0.5 975,868 - -0.5 975,868 - +0.0 976,006 + -2.1 976,013 - -0.5 976,196 + BPHYT_RS04260 0.24 +0.9 976,197 - BPHYT_RS04260 0.24 +0.5 976,228 - BPHYT_RS04260 0.27 -1.0 976,353 - BPHYT_RS04260 0.41 +1.1 976,496 + BPHYT_RS04260 0.57 +0.8 976,497 - BPHYT_RS04260 0.57 +0.3 976,498 + BPHYT_RS04260 0.57 +0.0 976,499 - BPHYT_RS04260 0.57 -1.0 976,619 + BPHYT_RS04260 0.70 +0.1 976,634 + BPHYT_RS04260 0.72 +0.5 976,634 + BPHYT_RS04260 0.72 +1.4 976,635 - BPHYT_RS04260 0.72 +0.8
Or see this region's nucleotide sequence