Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03225 and BPHYT_RS03230 are separated by 189 nucleotides BPHYT_RS03230 and BPHYT_RS03235 are separated by 118 nucleotides
BPHYT_RS03225: BPHYT_RS03225 - 3-hydroxyacyl-CoA dehydrogenase, at 723,469 to 725,904
_RS03225
BPHYT_RS03230: BPHYT_RS03230 - acetyl-CoA acetyltransferase, at 726,094 to 727,293
_RS03230
BPHYT_RS03235: BPHYT_RS03235 - enoyl-CoA hydratase, at 727,412 to 728,182
_RS03235
Position (kb) 726
727
728 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 725.221 kb on + strand, within BPHYT_RS03225 at 725.902 kb on + strand at 725.923 kb on + strand at 725.997 kb on + strand at 726.012 kb on + strand at 726.118 kb on + strand at 726.118 kb on + strand at 726.118 kb on + strand at 726.119 kb on - strand at 726.119 kb on - strand at 726.138 kb on + strand at 726.139 kb on - strand at 726.346 kb on - strand, within BPHYT_RS03230 at 726.492 kb on + strand, within BPHYT_RS03230 at 726.492 kb on + strand, within BPHYT_RS03230 at 726.493 kb on - strand, within BPHYT_RS03230 at 726.513 kb on + strand, within BPHYT_RS03230 at 726.548 kb on - strand, within BPHYT_RS03230 at 726.849 kb on + strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230 at 727.228 kb on + strand at 727.228 kb on + strand at 727.229 kb on - strand at 727.261 kb on - strand at 727.423 kb on + strand at 727.493 kb on - strand, within BPHYT_RS03235 at 727.505 kb on + strand, within BPHYT_RS03235 at 727.505 kb on + strand, within BPHYT_RS03235 at 728.205 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 725,221 + BPHYT_RS03225 0.72 -1.0 725,902 + -0.3 725,923 + -0.1 725,997 + -0.3 726,012 + -0.7 726,118 + -1.6 726,118 + +1.4 726,118 + +0.1 726,119 - -0.4 726,119 - +0.8 726,138 + -0.0 726,139 - -0.9 726,346 - BPHYT_RS03230 0.21 -0.6 726,492 + BPHYT_RS03230 0.33 -0.3 726,492 + BPHYT_RS03230 0.33 +1.3 726,493 - BPHYT_RS03230 0.33 -0.2 726,513 + BPHYT_RS03230 0.35 -0.4 726,548 - BPHYT_RS03230 0.38 +1.1 726,849 + BPHYT_RS03230 0.63 +0.0 726,850 - BPHYT_RS03230 0.63 +1.6 726,850 - BPHYT_RS03230 0.63 +0.9 726,850 - BPHYT_RS03230 0.63 +0.2 727,228 + -0.3 727,228 + -0.1 727,229 - +0.1 727,261 - -0.1 727,423 + -0.6 727,493 - BPHYT_RS03235 0.11 +2.4 727,505 + BPHYT_RS03235 0.12 +1.4 727,505 + BPHYT_RS03235 0.12 -1.1 728,205 + -3.3
Or see this region's nucleotide sequence