Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02515 and BPHYT_RS02520 are separated by 20 nucleotides BPHYT_RS02520 and BPHYT_RS02525 are separated by 78 nucleotides BPHYT_RS02525 and BPHYT_RS02530 are separated by 173 nucleotides
BPHYT_RS02515: BPHYT_RS02515 - ATPase, at 570,453 to 572,453
_RS02515
BPHYT_RS02520: BPHYT_RS02520 - Fis family transcriptional regulator, at 572,474 to 573,823
_RS02520
BPHYT_RS02525: BPHYT_RS02525 - membrane protein, at 573,902 to 574,432
_RS02525
BPHYT_RS02530: BPHYT_RS02530 - hypothetical protein, at 574,606 to 575,319
_RS02530
Position (kb) 572
573
574 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 571.492 kb on - strand, within BPHYT_RS02515 at 571.697 kb on + strand, within BPHYT_RS02515 at 571.963 kb on + strand, within BPHYT_RS02515 at 572.381 kb on - strand at 572.381 kb on - strand at 572.381 kb on - strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.500 kb on + strand at 572.734 kb on + strand, within BPHYT_RS02520 at 572.734 kb on + strand, within BPHYT_RS02520 at 573.143 kb on - strand, within BPHYT_RS02520 at 573.246 kb on + strand, within BPHYT_RS02520 at 573.341 kb on - strand, within BPHYT_RS02520 at 573.770 kb on + strand at 573.963 kb on - strand, within BPHYT_RS02525 at 573.963 kb on - strand, within BPHYT_RS02525 at 573.966 kb on + strand, within BPHYT_RS02525 at 573.966 kb on + strand, within BPHYT_RS02525 at 574.095 kb on + strand, within BPHYT_RS02525 at 574.096 kb on - strand, within BPHYT_RS02525 at 574.096 kb on - strand, within BPHYT_RS02525 at 574.107 kb on + strand at 574.107 kb on + strand, within BPHYT_RS02525 at 574.107 kb on + strand, within BPHYT_RS02525 at 574.108 kb on - strand, within BPHYT_RS02525 at 574.108 kb on - strand, within BPHYT_RS02525 at 574.108 kb on - strand, within BPHYT_RS02525 at 574.123 kb on - strand, within BPHYT_RS02525 at 574.171 kb on + strand, within BPHYT_RS02525 at 574.173 kb on + strand, within BPHYT_RS02525 at 574.173 kb on + strand, within BPHYT_RS02525 at 574.174 kb on - strand, within BPHYT_RS02525 at 574.174 kb on - strand, within BPHYT_RS02525 at 574.174 kb on - strand, within BPHYT_RS02525 at 574.243 kb on - strand, within BPHYT_RS02525 at 574.243 kb on - strand, within BPHYT_RS02525 at 574.338 kb on + strand, within BPHYT_RS02525 at 574.339 kb on - strand, within BPHYT_RS02525 at 574.383 kb on + strand at 574.383 kb on + strand at 574.384 kb on - strand at 574.514 kb on + strand at 574.519 kb on + strand at 574.564 kb on - strand at 574.566 kb on + strand at 574.567 kb on - strand at 574.575 kb on + strand at 574.575 kb on + strand at 574.575 kb on + strand at 574.576 kb on - strand at 574.576 kb on - strand at 574.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 571,492 - BPHYT_RS02515 0.52 -1.4 571,697 + BPHYT_RS02515 0.62 +0.5 571,963 + BPHYT_RS02515 0.75 +0.0 572,381 - -0.3 572,381 - +0.8 572,381 - +1.0 572,498 + +2.6 572,498 + +0.1 572,498 + +1.5 572,498 + +0.7 572,498 + -0.1 572,498 + +0.1 572,499 - +0.8 572,499 - -2.2 572,499 - +0.1 572,499 - +0.2 572,499 - -2.7 572,500 + -2.3 572,734 + BPHYT_RS02520 0.19 +0.5 572,734 + BPHYT_RS02520 0.19 +0.5 573,143 - BPHYT_RS02520 0.50 +2.3 573,246 + BPHYT_RS02520 0.57 -0.0 573,341 - BPHYT_RS02520 0.64 +1.1 573,770 + -3.3 573,963 - BPHYT_RS02525 0.11 +0.5 573,963 - BPHYT_RS02525 0.11 +0.2 573,966 + BPHYT_RS02525 0.12 +0.1 573,966 + BPHYT_RS02525 0.12 -2.3 574,095 + BPHYT_RS02525 0.36 -2.6 574,096 - BPHYT_RS02525 0.37 -1.5 574,096 - BPHYT_RS02525 0.37 -4.6 574,107 + +1.8 574,107 + BPHYT_RS02525 0.39 +0.1 574,107 + BPHYT_RS02525 0.39 -1.6 574,108 - BPHYT_RS02525 0.39 -0.2 574,108 - BPHYT_RS02525 0.39 +0.2 574,108 - BPHYT_RS02525 0.39 +1.6 574,123 - BPHYT_RS02525 0.42 -1.5 574,171 + BPHYT_RS02525 0.51 -2.0 574,173 + BPHYT_RS02525 0.51 -1.6 574,173 + BPHYT_RS02525 0.51 +0.1 574,174 - BPHYT_RS02525 0.51 -0.2 574,174 - BPHYT_RS02525 0.51 -0.5 574,174 - BPHYT_RS02525 0.51 -2.5 574,243 - BPHYT_RS02525 0.64 +1.7 574,243 - BPHYT_RS02525 0.64 -1.0 574,338 + BPHYT_RS02525 0.82 +3.8 574,339 - BPHYT_RS02525 0.82 -0.4 574,383 + +1.8 574,383 + +0.5 574,384 - +0.4 574,514 + -0.2 574,519 + -0.9 574,564 - +0.8 574,566 + +2.8 574,567 - -0.4 574,575 + -1.2 574,575 + +0.4 574,575 + -0.3 574,576 - -0.4 574,576 - -0.6 574,576 - +0.4
Or see this region's nucleotide sequence