Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02215 and BPHYT_RS02220 are separated by 7 nucleotides BPHYT_RS02220 and BPHYT_RS02225 are separated by 27 nucleotides BPHYT_RS02225 and BPHYT_RS02230 are separated by 47 nucleotides
BPHYT_RS02215: BPHYT_RS02215 - hypothetical protein, at 509,761 to 510,210
_RS02215
BPHYT_RS02220: BPHYT_RS02220 - butyryl-CoA dehydrogenase, at 510,218 to 511,348
_RS02220
BPHYT_RS02225: BPHYT_RS02225 - short-chain dehydrogenase, at 511,376 to 512,053
_RS02225
BPHYT_RS02230: BPHYT_RS02230 - acetyl-CoA acetyltransferase, at 512,101 to 513,294
_RS02230
Position (kb) 510
511
512 Strain fitness (log2 ratio) -1
0
1
2
3 at 509.508 kb on + strand at 509.705 kb on + strand at 509.706 kb on + strand at 509.706 kb on + strand at 509.707 kb on - strand at 509.707 kb on - strand at 510.271 kb on - strand at 510.271 kb on - strand at 510.913 kb on - strand, within BPHYT_RS02220 at 510.913 kb on - strand, within BPHYT_RS02220 at 511.402 kb on - strand at 511.407 kb on + strand at 511.993 kb on - strand at 511.993 kb on - strand at 512.056 kb on - strand at 512.056 kb on - strand at 512.056 kb on - strand at 512.058 kb on + strand at 512.058 kb on + strand at 512.342 kb on + strand, within BPHYT_RS02230
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 509,508 + +0.4 509,705 + +0.4 509,706 + +1.9 509,706 + +1.2 509,707 - +1.2 509,707 - +0.3 510,271 - -1.2 510,271 - +0.9 510,913 - BPHYT_RS02220 0.61 +0.9 510,913 - BPHYT_RS02220 0.61 +0.1 511,402 - -0.1 511,407 + +0.2 511,993 - +0.6 511,993 - -0.2 512,056 - +2.3 512,056 - +0.4 512,056 - +0.2 512,058 + -1.2 512,058 + +1.3 512,342 + BPHYT_RS02230 0.20 +3.0
Or see this region's nucleotide sequence