Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02005 and BPHYT_RS02010 are separated by 44 nucleotides BPHYT_RS02010 and BPHYT_RS02015 are separated by 95 nucleotides BPHYT_RS02015 and BPHYT_RS02020 are separated by 303 nucleotides
BPHYT_RS02005: BPHYT_RS02005 - diguanylate phosphodiesterase, at 454,840 to 456,108
_RS02005
BPHYT_RS02010: BPHYT_RS02010 - copper homeostasis protein CutC, at 456,153 to 456,848
_RS02010
BPHYT_RS02015: BPHYT_RS02015 - phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) <small>(from data)</small>, at 456,944 to 460,531
_RS02015
BPHYT_RS02020: BPHYT_RS02020 - filamentous hemagglutinin family outer membrane protein, at 460,835 to 463,273
_RS02020
Position (kb) 456
457
458
459
460
461 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 455.950 kb on + strand, within BPHYT_RS02005 at 456.153 kb on - strand at 456.355 kb on - strand, within BPHYT_RS02010 at 456.355 kb on - strand, within BPHYT_RS02010 at 456.370 kb on - strand, within BPHYT_RS02010 at 456.854 kb on + strand at 456.859 kb on - strand at 456.859 kb on - strand at 456.859 kb on - strand at 457.454 kb on + strand, within BPHYT_RS02015 at 457.466 kb on - strand, within BPHYT_RS02015 at 457.614 kb on + strand, within BPHYT_RS02015 at 457.614 kb on + strand, within BPHYT_RS02015 at 457.614 kb on + strand, within BPHYT_RS02015 at 457.615 kb on - strand, within BPHYT_RS02015 at 457.615 kb on - strand, within BPHYT_RS02015 at 457.629 kb on + strand, within BPHYT_RS02015 at 457.629 kb on + strand, within BPHYT_RS02015 at 457.630 kb on - strand at 458.113 kb on + strand, within BPHYT_RS02015 at 458.341 kb on - strand, within BPHYT_RS02015 at 458.490 kb on + strand, within BPHYT_RS02015 at 458.491 kb on - strand, within BPHYT_RS02015 at 458.935 kb on - strand, within BPHYT_RS02015 at 458.947 kb on - strand, within BPHYT_RS02015 at 459.006 kb on + strand, within BPHYT_RS02015 at 459.190 kb on + strand, within BPHYT_RS02015 at 459.191 kb on - strand, within BPHYT_RS02015 at 459.191 kb on - strand, within BPHYT_RS02015 at 459.191 kb on - strand, within BPHYT_RS02015 at 459.441 kb on + strand, within BPHYT_RS02015 at 459.442 kb on - strand, within BPHYT_RS02015 at 459.442 kb on - strand, within BPHYT_RS02015 at 459.447 kb on + strand, within BPHYT_RS02015 at 459.447 kb on + strand, within BPHYT_RS02015 at 459.447 kb on + strand, within BPHYT_RS02015 at 459.447 kb on + strand, within BPHYT_RS02015 at 459.448 kb on - strand, within BPHYT_RS02015 at 459.448 kb on - strand, within BPHYT_RS02015 at 459.448 kb on - strand, within BPHYT_RS02015 at 459.568 kb on - strand, within BPHYT_RS02015 at 459.568 kb on - strand, within BPHYT_RS02015 at 459.907 kb on - strand, within BPHYT_RS02015 at 459.948 kb on + strand, within BPHYT_RS02015 at 460.485 kb on + strand at 460.486 kb on - strand at 460.549 kb on - strand at 460.823 kb on + strand at 460.836 kb on + strand at 460.837 kb on - strand at 460.861 kb on - strand at 460.867 kb on - strand at 460.881 kb on + strand at 460.894 kb on - strand at 460.900 kb on + strand at 460.901 kb on - strand at 461.186 kb on + strand, within BPHYT_RS02020 at 461.187 kb on - strand, within BPHYT_RS02020 at 461.246 kb on - strand, within BPHYT_RS02020 at 461.310 kb on - strand, within BPHYT_RS02020
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 455,950 + BPHYT_RS02005 0.87 +1.9 456,153 - -3.4 456,355 - BPHYT_RS02010 0.29 -0.9 456,355 - BPHYT_RS02010 0.29 +0.9 456,370 - BPHYT_RS02010 0.31 -2.2 456,854 + -2.4 456,859 - -0.0 456,859 - -1.1 456,859 - -0.5 457,454 + BPHYT_RS02015 0.14 -0.4 457,466 - BPHYT_RS02015 0.15 -0.2 457,614 + BPHYT_RS02015 0.19 -1.0 457,614 + BPHYT_RS02015 0.19 -1.4 457,614 + BPHYT_RS02015 0.19 -0.4 457,615 - BPHYT_RS02015 0.19 -1.2 457,615 - BPHYT_RS02015 0.19 -2.9 457,629 + BPHYT_RS02015 0.19 -4.6 457,629 + BPHYT_RS02015 0.19 -2.3 457,630 - +1.9 458,113 + BPHYT_RS02015 0.33 -0.8 458,341 - BPHYT_RS02015 0.39 -0.4 458,490 + BPHYT_RS02015 0.43 +0.2 458,491 - BPHYT_RS02015 0.43 -0.6 458,935 - BPHYT_RS02015 0.55 -2.2 458,947 - BPHYT_RS02015 0.56 +1.9 459,006 + BPHYT_RS02015 0.57 -2.3 459,190 + BPHYT_RS02015 0.63 -0.1 459,191 - BPHYT_RS02015 0.63 -1.2 459,191 - BPHYT_RS02015 0.63 +0.3 459,191 - BPHYT_RS02015 0.63 -1.2 459,441 + BPHYT_RS02015 0.70 -1.9 459,442 - BPHYT_RS02015 0.70 -0.8 459,442 - BPHYT_RS02015 0.70 -1.8 459,447 + BPHYT_RS02015 0.70 -2.0 459,447 + BPHYT_RS02015 0.70 -3.3 459,447 + BPHYT_RS02015 0.70 -2.8 459,447 + BPHYT_RS02015 0.70 -0.1 459,448 - BPHYT_RS02015 0.70 -4.3 459,448 - BPHYT_RS02015 0.70 +1.5 459,448 - BPHYT_RS02015 0.70 -0.9 459,568 - BPHYT_RS02015 0.73 -2.5 459,568 - BPHYT_RS02015 0.73 -0.8 459,907 - BPHYT_RS02015 0.83 -0.2 459,948 + BPHYT_RS02015 0.84 -3.8 460,485 + -1.6 460,486 - -0.9 460,549 - -0.0 460,823 + -1.4 460,836 + +0.6 460,837 - -0.6 460,861 - -0.4 460,867 - +0.3 460,881 + -0.1 460,894 - +0.5 460,900 + -2.9 460,901 - -1.3 461,186 + BPHYT_RS02020 0.14 -1.5 461,187 - BPHYT_RS02020 0.14 +0.8 461,246 - BPHYT_RS02020 0.17 +1.0 461,310 - BPHYT_RS02020 0.19 +2.5
Or see this region's nucleotide sequence