Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01855 and BPHYT_RS01860 are separated by 278 nucleotides BPHYT_RS01860 and BPHYT_RS01865 are separated by 235 nucleotides
BPHYT_RS01855: BPHYT_RS01855 - FAD-dependent oxidoreductase, at 421,365 to 422,471
_RS01855
BPHYT_RS01860: BPHYT_RS01860 - high potential iron-sulfur protein, at 422,750 to 423,061
_RS01860
BPHYT_RS01865: BPHYT_RS01865 - major facilitator transporter, at 423,297 to 424,589
_RS01865
Position (kb) 422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 422.058 kb on + strand, within BPHYT_RS01855 at 422.058 kb on + strand, within BPHYT_RS01855 at 422.100 kb on + strand, within BPHYT_RS01855 at 422.202 kb on + strand, within BPHYT_RS01855 at 422.203 kb on - strand, within BPHYT_RS01855 at 422.203 kb on - strand, within BPHYT_RS01855 at 422.235 kb on + strand, within BPHYT_RS01855 at 422.254 kb on - strand, within BPHYT_RS01855 at 422.315 kb on - strand, within BPHYT_RS01855 at 422.647 kb on - strand at 422.689 kb on - strand at 422.731 kb on - strand at 422.731 kb on - strand at 422.732 kb on + strand at 422.880 kb on - strand, within BPHYT_RS01860 at 422.924 kb on + strand, within BPHYT_RS01860 at 422.925 kb on - strand, within BPHYT_RS01860 at 422.953 kb on + strand, within BPHYT_RS01860 at 422.954 kb on - strand, within BPHYT_RS01860 at 422.954 kb on - strand, within BPHYT_RS01860 at 422.960 kb on + strand, within BPHYT_RS01860 at 423.044 kb on + strand at 423.044 kb on + strand at 423.045 kb on - strand at 423.047 kb on - strand at 423.206 kb on - strand at 423.253 kb on - strand at 423.265 kb on + strand at 423.266 kb on - strand at 423.266 kb on - strand at 423.272 kb on + strand at 423.370 kb on - strand at 423.509 kb on - strand, within BPHYT_RS01865 at 423.519 kb on + strand, within BPHYT_RS01865 at 423.520 kb on - strand, within BPHYT_RS01865 at 423.647 kb on - strand, within BPHYT_RS01865 at 423.900 kb on + strand, within BPHYT_RS01865 at 423.901 kb on - strand, within BPHYT_RS01865 at 424.047 kb on + strand, within BPHYT_RS01865 at 424.047 kb on + strand, within BPHYT_RS01865 at 424.048 kb on - strand, within BPHYT_RS01865
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 422,058 + BPHYT_RS01855 0.63 +0.3 422,058 + BPHYT_RS01855 0.63 +0.9 422,100 + BPHYT_RS01855 0.66 -0.3 422,202 + BPHYT_RS01855 0.76 -1.0 422,203 - BPHYT_RS01855 0.76 +0.5 422,203 - BPHYT_RS01855 0.76 -0.4 422,235 + BPHYT_RS01855 0.79 +0.3 422,254 - BPHYT_RS01855 0.80 -3.0 422,315 - BPHYT_RS01855 0.86 -0.3 422,647 - -1.5 422,689 - +0.2 422,731 - +0.4 422,731 - +0.1 422,732 + -0.9 422,880 - BPHYT_RS01860 0.42 +1.3 422,924 + BPHYT_RS01860 0.56 -0.8 422,925 - BPHYT_RS01860 0.56 +1.4 422,953 + BPHYT_RS01860 0.65 +0.6 422,954 - BPHYT_RS01860 0.65 -2.3 422,954 - BPHYT_RS01860 0.65 +0.2 422,960 + BPHYT_RS01860 0.67 +0.4 423,044 + -0.1 423,044 + -0.4 423,045 - +1.0 423,047 - -3.2 423,206 - -0.1 423,253 - +0.3 423,265 + +0.7 423,266 - +4.7 423,266 - -1.0 423,272 + +0.8 423,370 - +1.9 423,509 - BPHYT_RS01865 0.16 -2.3 423,519 + BPHYT_RS01865 0.17 +1.0 423,520 - BPHYT_RS01865 0.17 +0.2 423,647 - BPHYT_RS01865 0.27 -1.5 423,900 + BPHYT_RS01865 0.47 -0.3 423,901 - BPHYT_RS01865 0.47 +0.7 424,047 + BPHYT_RS01865 0.58 -1.6 424,047 + BPHYT_RS01865 0.58 +0.3 424,048 - BPHYT_RS01865 0.58 +0.4
Or see this region's nucleotide sequence