Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01835 and BPHYT_RS01840 are separated by 41 nucleotides BPHYT_RS01840 and BPHYT_RS01845 are separated by 88 nucleotides BPHYT_RS01845 and BPHYT_RS01850 are separated by 268 nucleotides
BPHYT_RS01835: BPHYT_RS01835 - aldose epimerase, at 417,193 to 418,233
_RS01835
BPHYT_RS01840: BPHYT_RS01840 - endonuclease, at 418,275 to 419,072
_RS01840
BPHYT_RS01845: BPHYT_RS01845 - hypothetical protein, at 419,161 to 419,700
_RS01845
BPHYT_RS01850: BPHYT_RS01850 - ATPase AAA, at 419,969 to 420,946
_RS01850
Position (kb) 419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 418.231 kb on + strand at 418.232 kb on - strand at 418.276 kb on + strand at 418.298 kb on + strand at 418.300 kb on + strand at 418.300 kb on + strand at 418.300 kb on + strand at 418.300 kb on + strand at 418.301 kb on - strand at 418.301 kb on - strand at 418.301 kb on - strand at 418.997 kb on + strand at 418.998 kb on - strand at 419.038 kb on - strand at 419.472 kb on + strand, within BPHYT_RS01845 at 419.700 kb on + strand at 419.701 kb on - strand at 419.751 kb on + strand at 419.752 kb on - strand at 419.752 kb on - strand at 419.761 kb on - strand at 419.761 kb on - strand at 419.821 kb on + strand at 419.891 kb on + strand at 419.891 kb on + strand at 419.926 kb on + strand at 419.927 kb on - strand at 419.927 kb on - strand at 419.927 kb on - strand at 419.927 kb on - strand at 420.024 kb on - strand at 420.121 kb on + strand, within BPHYT_RS01850 at 420.341 kb on + strand, within BPHYT_RS01850 at 420.347 kb on + strand, within BPHYT_RS01850 at 420.347 kb on + strand, within BPHYT_RS01850 at 420.347 kb on + strand, within BPHYT_RS01850 at 420.348 kb on - strand, within BPHYT_RS01850 at 420.455 kb on + strand, within BPHYT_RS01850 at 420.456 kb on - strand, within BPHYT_RS01850 at 420.512 kb on + strand, within BPHYT_RS01850 at 420.512 kb on + strand, within BPHYT_RS01850 at 420.512 kb on + strand, within BPHYT_RS01850 at 420.512 kb on + strand, within BPHYT_RS01850 at 420.513 kb on - strand, within BPHYT_RS01850 at 420.513 kb on - strand, within BPHYT_RS01850 at 420.513 kb on - strand, within BPHYT_RS01850 at 420.533 kb on + strand, within BPHYT_RS01850 at 420.533 kb on + strand, within BPHYT_RS01850 at 420.533 kb on + strand, within BPHYT_RS01850 at 420.533 kb on + strand, within BPHYT_RS01850 at 420.533 kb on + strand, within BPHYT_RS01850 at 420.534 kb on - strand, within BPHYT_RS01850 at 420.534 kb on - strand, within BPHYT_RS01850 at 420.534 kb on - strand, within BPHYT_RS01850 at 420.677 kb on + strand, within BPHYT_RS01850 at 420.677 kb on + strand, within BPHYT_RS01850 at 420.677 kb on + strand, within BPHYT_RS01850 at 420.677 kb on + strand, within BPHYT_RS01850 at 420.678 kb on - strand, within BPHYT_RS01850 at 420.678 kb on - strand, within BPHYT_RS01850 at 420.678 kb on - strand, within BPHYT_RS01850
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 418,231 + +0.2 418,232 - +1.0 418,276 + -0.1 418,298 + -1.9 418,300 + -2.7 418,300 + +1.9 418,300 + -1.9 418,300 + +4.2 418,301 - +0.4 418,301 - +1.6 418,301 - -3.1 418,997 + +2.4 418,998 - -0.5 419,038 - -2.4 419,472 + BPHYT_RS01845 0.58 -0.7 419,700 + -2.0 419,701 - +1.4 419,751 + -0.5 419,752 - -0.0 419,752 - -3.6 419,761 - +0.3 419,761 - -0.2 419,821 + +1.5 419,891 + +1.1 419,891 + +0.0 419,926 + +0.9 419,927 - -0.8 419,927 - +0.4 419,927 - +1.9 419,927 - -1.6 420,024 - -1.6 420,121 + BPHYT_RS01850 0.16 -0.5 420,341 + BPHYT_RS01850 0.38 -1.8 420,347 + BPHYT_RS01850 0.39 +0.6 420,347 + BPHYT_RS01850 0.39 +0.5 420,347 + BPHYT_RS01850 0.39 -0.4 420,348 - BPHYT_RS01850 0.39 +0.1 420,455 + BPHYT_RS01850 0.50 +3.5 420,456 - BPHYT_RS01850 0.50 -0.3 420,512 + BPHYT_RS01850 0.56 -0.7 420,512 + BPHYT_RS01850 0.56 -0.7 420,512 + BPHYT_RS01850 0.56 -0.4 420,512 + BPHYT_RS01850 0.56 -0.1 420,513 - BPHYT_RS01850 0.56 +0.3 420,513 - BPHYT_RS01850 0.56 -0.4 420,513 - BPHYT_RS01850 0.56 -1.6 420,533 + BPHYT_RS01850 0.58 -3.4 420,533 + BPHYT_RS01850 0.58 -2.3 420,533 + BPHYT_RS01850 0.58 -0.1 420,533 + BPHYT_RS01850 0.58 -1.1 420,533 + BPHYT_RS01850 0.58 +0.1 420,534 - BPHYT_RS01850 0.58 -1.1 420,534 - BPHYT_RS01850 0.58 +0.4 420,534 - BPHYT_RS01850 0.58 -2.9 420,677 + BPHYT_RS01850 0.72 -2.1 420,677 + BPHYT_RS01850 0.72 -1.8 420,677 + BPHYT_RS01850 0.72 +0.9 420,677 + BPHYT_RS01850 0.72 -0.5 420,678 - BPHYT_RS01850 0.72 -1.9 420,678 - BPHYT_RS01850 0.72 +2.9 420,678 - BPHYT_RS01850 0.72 -0.9
Or see this region's nucleotide sequence