Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01715 and BPHYT_RS01720 are separated by 88 nucleotides BPHYT_RS01720 and BPHYT_RS01725 are separated by 427 nucleotides BPHYT_RS01725 and BPHYT_RS01730 are separated by 115 nucleotides
BPHYT_RS01715: BPHYT_RS01715 - RND transporter, at 388,079 to 389,284
_RS01715
BPHYT_RS01720: BPHYT_RS01720 - acriflavin resistance protein, at 389,373 to 392,555
_RS01720
BPHYT_RS01725: BPHYT_RS01725 - hypothetical protein, at 392,983 to 393,195
_RS01725
BPHYT_RS01730: BPHYT_RS01730 - serine/threonine protein kinase, at 393,311 to 394,339
_RS01730
Position (kb) 389
390
391
392
393 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 388.415 kb on + strand, within BPHYT_RS01715 at 388.416 kb on - strand, within BPHYT_RS01715 at 388.563 kb on + strand, within BPHYT_RS01715 at 388.689 kb on + strand, within BPHYT_RS01715 at 388.690 kb on - strand, within BPHYT_RS01715 at 388.690 kb on - strand, within BPHYT_RS01715 at 389.116 kb on + strand, within BPHYT_RS01715 at 389.167 kb on + strand at 389.329 kb on + strand at 389.330 kb on - strand at 389.330 kb on - strand at 389.330 kb on - strand at 389.863 kb on + strand, within BPHYT_RS01720 at 389.863 kb on + strand, within BPHYT_RS01720 at 389.864 kb on - strand, within BPHYT_RS01720 at 389.864 kb on - strand, within BPHYT_RS01720 at 390.047 kb on + strand, within BPHYT_RS01720 at 390.071 kb on - strand, within BPHYT_RS01720 at 390.211 kb on - strand, within BPHYT_RS01720 at 390.217 kb on + strand, within BPHYT_RS01720 at 390.483 kb on - strand, within BPHYT_RS01720 at 390.679 kb on + strand, within BPHYT_RS01720 at 390.680 kb on - strand, within BPHYT_RS01720 at 391.012 kb on + strand, within BPHYT_RS01720 at 391.073 kb on + strand, within BPHYT_RS01720 at 391.073 kb on + strand, within BPHYT_RS01720 at 391.082 kb on - strand, within BPHYT_RS01720 at 391.093 kb on + strand, within BPHYT_RS01720 at 391.094 kb on - strand, within BPHYT_RS01720 at 391.132 kb on + strand, within BPHYT_RS01720 at 391.133 kb on - strand, within BPHYT_RS01720 at 391.791 kb on - strand, within BPHYT_RS01720 at 391.792 kb on + strand, within BPHYT_RS01720 at 391.793 kb on - strand, within BPHYT_RS01720 at 392.356 kb on + strand at 392.404 kb on + strand at 392.405 kb on - strand at 392.497 kb on - strand at 392.520 kb on - strand at 392.718 kb on + strand at 392.718 kb on + strand at 392.718 kb on + strand at 392.718 kb on + strand at 392.892 kb on + strand at 392.892 kb on + strand at 392.922 kb on + strand at 393.015 kb on + strand, within BPHYT_RS01725 at 393.085 kb on + strand, within BPHYT_RS01725 at 393.085 kb on + strand, within BPHYT_RS01725 at 393.221 kb on + strand at 393.221 kb on + strand at 393.222 kb on - strand at 393.476 kb on + strand, within BPHYT_RS01730 at 393.521 kb on + strand, within BPHYT_RS01730
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 388,415 + BPHYT_RS01715 0.28 -0.4 388,416 - BPHYT_RS01715 0.28 -0.5 388,563 + BPHYT_RS01715 0.40 -0.2 388,689 + BPHYT_RS01715 0.51 -1.5 388,690 - BPHYT_RS01715 0.51 +1.8 388,690 - BPHYT_RS01715 0.51 -0.4 389,116 + BPHYT_RS01715 0.86 -0.3 389,167 + -0.8 389,329 + -0.7 389,330 - -0.2 389,330 - +0.5 389,330 - -1.7 389,863 + BPHYT_RS01720 0.15 +4.2 389,863 + BPHYT_RS01720 0.15 -2.6 389,864 - BPHYT_RS01720 0.15 -0.2 389,864 - BPHYT_RS01720 0.15 -0.2 390,047 + BPHYT_RS01720 0.21 +0.2 390,071 - BPHYT_RS01720 0.22 -0.3 390,211 - BPHYT_RS01720 0.26 -1.3 390,217 + BPHYT_RS01720 0.27 -1.3 390,483 - BPHYT_RS01720 0.35 -0.7 390,679 + BPHYT_RS01720 0.41 -1.7 390,680 - BPHYT_RS01720 0.41 -0.6 391,012 + BPHYT_RS01720 0.51 -0.2 391,073 + BPHYT_RS01720 0.53 -0.5 391,073 + BPHYT_RS01720 0.53 -1.4 391,082 - BPHYT_RS01720 0.54 -0.9 391,093 + BPHYT_RS01720 0.54 +0.8 391,094 - BPHYT_RS01720 0.54 +0.1 391,132 + BPHYT_RS01720 0.55 +3.4 391,133 - BPHYT_RS01720 0.55 +1.3 391,791 - BPHYT_RS01720 0.76 +0.2 391,792 + BPHYT_RS01720 0.76 +0.8 391,793 - BPHYT_RS01720 0.76 -2.1 392,356 + +0.4 392,404 + +0.6 392,405 - +0.2 392,497 - -0.4 392,520 - +1.2 392,718 + +0.3 392,718 + -1.9 392,718 + +1.5 392,718 + +0.4 392,892 + +0.6 392,892 + +0.3 392,922 + +0.1 393,015 + BPHYT_RS01725 0.15 +0.5 393,085 + BPHYT_RS01725 0.48 -0.3 393,085 + BPHYT_RS01725 0.48 -0.6 393,221 + +0.8 393,221 + -0.4 393,222 - -1.9 393,476 + BPHYT_RS01730 0.16 -0.6 393,521 + BPHYT_RS01730 0.20 -0.7
Or see this region's nucleotide sequence