Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01585 and BPHYT_RS01590 are separated by 14 nucleotides BPHYT_RS01590 and BPHYT_RS01595 overlap by 4 nucleotides BPHYT_RS01595 and BPHYT_RS01600 are separated by 323 nucleotides
BPHYT_RS01585: BPHYT_RS01585 - major facilitator superfamily protein, at 359,625 to 361,019
_RS01585
BPHYT_RS01590: BPHYT_RS01590 - methionine biosynthesis protein MetW, at 361,034 to 361,642
_RS01590
BPHYT_RS01595: BPHYT_RS01595 - homoserine O-acetyltransferase, at 361,639 to 362,784
_RS01595
BPHYT_RS01600: BPHYT_RS01600 - dihydroorotate oxidase, at 363,108 to 363,791
_RS01600
BPHYT_RS01605: BPHYT_RS01605 - HAD family hydrolase, at 363,758 to 364,561
_RS01605
Position (kb) 361
362
363 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 360.711 kb on + strand, within BPHYT_RS01585 at 360.712 kb on - strand, within BPHYT_RS01585 at 360.712 kb on - strand, within BPHYT_RS01585 at 360.803 kb on - strand, within BPHYT_RS01585 at 360.987 kb on - strand at 361.023 kb on + strand at 361.024 kb on - strand at 361.024 kb on - strand at 361.066 kb on + strand at 361.067 kb on - strand at 361.067 kb on - strand at 361.067 kb on - strand at 361.067 kb on - strand at 361.185 kb on - strand, within BPHYT_RS01590 at 361.185 kb on - strand, within BPHYT_RS01590 at 361.209 kb on + strand, within BPHYT_RS01590 at 361.209 kb on + strand, within BPHYT_RS01590 at 361.210 kb on - strand, within BPHYT_RS01590 at 361.621 kb on - strand at 361.663 kb on - strand at 361.663 kb on - strand at 361.663 kb on - strand at 361.674 kb on - strand at 361.694 kb on + strand at 361.751 kb on + strand at 361.752 kb on - strand at 361.752 kb on - strand at 361.757 kb on - strand, within BPHYT_RS01595 at 361.847 kb on + strand, within BPHYT_RS01595 at 361.847 kb on + strand, within BPHYT_RS01595 at 361.940 kb on + strand, within BPHYT_RS01595 at 361.941 kb on - strand, within BPHYT_RS01595 at 361.941 kb on - strand, within BPHYT_RS01595 at 361.958 kb on + strand, within BPHYT_RS01595 at 361.982 kb on + strand, within BPHYT_RS01595 at 361.991 kb on + strand, within BPHYT_RS01595 at 361.992 kb on - strand, within BPHYT_RS01595 at 361.992 kb on - strand, within BPHYT_RS01595 at 362.030 kb on + strand, within BPHYT_RS01595 at 362.030 kb on + strand, within BPHYT_RS01595 at 362.102 kb on + strand, within BPHYT_RS01595 at 362.102 kb on + strand, within BPHYT_RS01595 at 362.102 kb on + strand, within BPHYT_RS01595 at 362.102 kb on + strand, within BPHYT_RS01595 at 362.103 kb on - strand, within BPHYT_RS01595 at 362.165 kb on + strand, within BPHYT_RS01595 at 362.166 kb on - strand, within BPHYT_RS01595 at 362.166 kb on - strand, within BPHYT_RS01595 at 362.168 kb on + strand, within BPHYT_RS01595 at 362.169 kb on - strand, within BPHYT_RS01595 at 362.598 kb on - strand, within BPHYT_RS01595 at 362.656 kb on - strand, within BPHYT_RS01595 at 362.656 kb on - strand, within BPHYT_RS01595 at 362.678 kb on + strand at 362.799 kb on - strand at 362.882 kb on + strand at 362.883 kb on - strand at 362.884 kb on + strand at 362.884 kb on + strand at 362.884 kb on + strand at 362.885 kb on - strand at 362.950 kb on + strand at 363.043 kb on - strand at 363.043 kb on - strand at 363.109 kb on + strand at 363.178 kb on + strand, within BPHYT_RS01600 at 363.178 kb on + strand, within BPHYT_RS01600 at 363.179 kb on - strand, within BPHYT_RS01600 at 363.179 kb on - strand, within BPHYT_RS01600 at 363.200 kb on + strand, within BPHYT_RS01600 at 363.200 kb on + strand, within BPHYT_RS01600 at 363.200 kb on + strand, within BPHYT_RS01600 at 363.201 kb on - strand, within BPHYT_RS01600 at 363.201 kb on - strand, within BPHYT_RS01600 at 363.202 kb on + strand, within BPHYT_RS01600 at 363.202 kb on + strand, within BPHYT_RS01600 at 363.203 kb on - strand, within BPHYT_RS01600 at 363.759 kb on + strand at 363.759 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 360,711 + BPHYT_RS01585 0.78 -1.0 360,712 - BPHYT_RS01585 0.78 +3.0 360,712 - BPHYT_RS01585 0.78 +1.3 360,803 - BPHYT_RS01585 0.84 +1.7 360,987 - +1.7 361,023 + +0.7 361,024 - +0.3 361,024 - +0.5 361,066 + +0.8 361,067 - -1.7 361,067 - -2.0 361,067 - -3.2 361,067 - -4.7 361,185 - BPHYT_RS01590 0.25 -4.2 361,185 - BPHYT_RS01590 0.25 -3.8 361,209 + BPHYT_RS01590 0.29 -1.6 361,209 + BPHYT_RS01590 0.29 -4.3 361,210 - BPHYT_RS01590 0.29 -1.7 361,621 - -0.7 361,663 - -4.9 361,663 - -2.4 361,663 - -3.3 361,674 - -4.4 361,694 + -2.4 361,751 + -3.5 361,752 - -3.0 361,752 - -1.9 361,757 - BPHYT_RS01595 0.10 -2.7 361,847 + BPHYT_RS01595 0.18 -4.5 361,847 + BPHYT_RS01595 0.18 -2.7 361,940 + BPHYT_RS01595 0.26 -5.5 361,941 - BPHYT_RS01595 0.26 -2.9 361,941 - BPHYT_RS01595 0.26 -1.0 361,958 + BPHYT_RS01595 0.28 -5.4 361,982 + BPHYT_RS01595 0.30 -2.2 361,991 + BPHYT_RS01595 0.31 -5.0 361,992 - BPHYT_RS01595 0.31 -0.7 361,992 - BPHYT_RS01595 0.31 -3.2 362,030 + BPHYT_RS01595 0.34 -4.4 362,030 + BPHYT_RS01595 0.34 -3.8 362,102 + BPHYT_RS01595 0.40 -3.7 362,102 + BPHYT_RS01595 0.40 -3.9 362,102 + BPHYT_RS01595 0.40 -4.1 362,102 + BPHYT_RS01595 0.40 -3.2 362,103 - BPHYT_RS01595 0.40 -2.7 362,165 + BPHYT_RS01595 0.46 -3.3 362,166 - BPHYT_RS01595 0.46 -2.3 362,166 - BPHYT_RS01595 0.46 -1.6 362,168 + BPHYT_RS01595 0.46 -4.7 362,169 - BPHYT_RS01595 0.46 -3.5 362,598 - BPHYT_RS01595 0.84 -2.0 362,656 - BPHYT_RS01595 0.89 -1.9 362,656 - BPHYT_RS01595 0.89 -1.6 362,678 + -3.1 362,799 - +1.8 362,882 + -3.6 362,883 - -0.3 362,884 + -3.6 362,884 + +1.8 362,884 + -3.3 362,885 - +0.5 362,950 + -3.7 363,043 - +1.8 363,043 - -2.7 363,109 + +0.5 363,178 + BPHYT_RS01600 0.10 -0.9 363,178 + BPHYT_RS01600 0.10 -0.7 363,179 - BPHYT_RS01600 0.10 -0.1 363,179 - BPHYT_RS01600 0.10 -1.5 363,200 + BPHYT_RS01600 0.13 -0.3 363,200 + BPHYT_RS01600 0.13 +1.0 363,200 + BPHYT_RS01600 0.13 -0.7 363,201 - BPHYT_RS01600 0.14 +3.7 363,201 - BPHYT_RS01600 0.14 -1.0 363,202 + BPHYT_RS01600 0.14 -0.9 363,202 + BPHYT_RS01600 0.14 -3.4 363,203 - BPHYT_RS01600 0.14 +0.0 363,759 + -1.0 363,759 + +0.6
Or see this region's nucleotide sequence