Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00200 and BPHYT_RS00205 are separated by 185 nucleotides BPHYT_RS00205 and BPHYT_RS00210 overlap by 23 nucleotides BPHYT_RS00210 and BPHYT_RS00215 are separated by 10 nucleotides BPHYT_RS00215 and BPHYT_RS00220 are separated by 5 nucleotides
BPHYT_RS00200: BPHYT_RS00200 - amidase, at 53,149 to 54,552
_RS00200
BPHYT_RS00205: BPHYT_RS00205 - DeoR family transcriptional regulator, at 54,738 to 55,496
_RS00205
BPHYT_RS00210: BPHYT_RS00210 - allantoate amidohydrolase, at 55,474 to 56,766
_RS00210
BPHYT_RS00215: BPHYT_RS00215 - aminoglycoside phosphotransferase, at 56,777 to 57,727
_RS00215
BPHYT_RS00220: BPHYT_RS00220 - choline kinase, at 57,733 to 58,674
_RS00220
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.566 kb on - strand at 54.566 kb on - strand at 54.566 kb on - strand at 54.671 kb on + strand at 54.708 kb on - strand at 54.715 kb on + strand at 54.756 kb on - strand at 55.202 kb on + strand, within BPHYT_RS00205 at 55.231 kb on - strand, within BPHYT_RS00205 at 55.450 kb on - strand at 55.460 kb on + strand at 55.483 kb on + strand at 55.483 kb on + strand at 55.484 kb on - strand at 55.484 kb on - strand at 55.484 kb on - strand at 55.494 kb on + strand at 55.634 kb on + strand, within BPHYT_RS00210 at 55.739 kb on - strand, within BPHYT_RS00210 at 55.764 kb on + strand, within BPHYT_RS00210 at 55.765 kb on - strand, within BPHYT_RS00210 at 56.075 kb on - strand, within BPHYT_RS00210 at 56.136 kb on - strand, within BPHYT_RS00210 at 56.136 kb on - strand, within BPHYT_RS00210 at 56.267 kb on - strand, within BPHYT_RS00210 at 56.368 kb on + strand, within BPHYT_RS00210 at 56.369 kb on - strand, within BPHYT_RS00210 at 56.489 kb on + strand, within BPHYT_RS00210 at 56.606 kb on + strand, within BPHYT_RS00210 at 56.607 kb on - strand, within BPHYT_RS00210 at 56.639 kb on + strand at 56.664 kb on + strand at 56.849 kb on - strand at 56.958 kb on - strand, within BPHYT_RS00215 at 57.044 kb on + strand, within BPHYT_RS00215 at 57.045 kb on - strand, within BPHYT_RS00215 at 57.543 kb on - strand, within BPHYT_RS00215 at 57.601 kb on - strand, within BPHYT_RS00215 at 57.601 kb on - strand, within BPHYT_RS00215 at 57.660 kb on + strand at 57.725 kb on + strand at 57.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 54,566 - +2.4 54,566 - -3.2 54,566 - -1.9 54,671 + +0.0 54,708 - +0.2 54,715 + -0.5 54,756 - -0.2 55,202 + BPHYT_RS00205 0.61 +0.1 55,231 - BPHYT_RS00205 0.65 +0.8 55,450 - -0.2 55,460 + -0.6 55,483 + -1.8 55,483 + +0.1 55,484 - -0.2 55,484 - -0.8 55,484 - -0.4 55,494 + +2.3 55,634 + BPHYT_RS00210 0.12 +0.1 55,739 - BPHYT_RS00210 0.20 +2.1 55,764 + BPHYT_RS00210 0.22 +0.5 55,765 - BPHYT_RS00210 0.23 +0.5 56,075 - BPHYT_RS00210 0.46 +0.1 56,136 - BPHYT_RS00210 0.51 +0.9 56,136 - BPHYT_RS00210 0.51 -2.4 56,267 - BPHYT_RS00210 0.61 +2.5 56,368 + BPHYT_RS00210 0.69 -2.8 56,369 - BPHYT_RS00210 0.69 -0.0 56,489 + BPHYT_RS00210 0.78 -2.0 56,606 + BPHYT_RS00210 0.88 +0.4 56,607 - BPHYT_RS00210 0.88 -0.9 56,639 + +0.4 56,664 + -0.2 56,849 - -3.0 56,958 - BPHYT_RS00215 0.19 -0.6 57,044 + BPHYT_RS00215 0.28 -0.5 57,045 - BPHYT_RS00215 0.28 -0.2 57,543 - BPHYT_RS00215 0.81 -0.3 57,601 - BPHYT_RS00215 0.87 +0.2 57,601 - BPHYT_RS00215 0.87 -1.8 57,660 + -0.1 57,725 + +0.1 57,725 + +0.0
Or see this region's nucleotide sequence