Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00195

Experiment: Phenylacetic 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenylacetic 5 mM (C)
50,475	-		BPHYT_RS00190	0.31	+1.6
50,483	+		BPHYT_RS00190	0.32	+0.6
50,484	-		BPHYT_RS00190	0.32	-0.2
50,543	+		BPHYT_RS00190	0.37	-3.8
50,666	+		BPHYT_RS00190	0.49	+0.2
50,667	-		BPHYT_RS00190	0.49	+0.5
50,788	-		BPHYT_RS00190	0.60	-2.0
50,825	+		BPHYT_RS00190	0.64	-2.1
50,826	-		BPHYT_RS00190	0.64	-0.0
50,826	-		BPHYT_RS00190	0.64	+0.6
50,826	-				+1.8
50,826	-		BPHYT_RS00190	0.64	+1.3
50,826	-		BPHYT_RS00190	0.64	+2.0
50,931	-		BPHYT_RS00190	0.74	-0.5
50,931	-		BPHYT_RS00190	0.74	+1.6
51,051	-		BPHYT_RS00190	0.85	+0.4
51,123	+				+1.4
51,123	+				+3.2
51,124	-				+0.1
51,172	-				+0.6
51,318	-				+0.1
51,318	-				-2.8
51,338	+				-0.2
51,339	-				-0.4
51,339	-				+0.2
51,413	+				+4.8
51,827	+		BPHYT_RS00195	0.43	-0.5
51,956	+		BPHYT_RS00195	0.57	+1.0
51,957	-		BPHYT_RS00195	0.57	+3.4
52,046	+		BPHYT_RS00195	0.67	+0.1
52,046	+		BPHYT_RS00195	0.67	-1.2
52,046	+		BPHYT_RS00195	0.67	-0.3
52,250	+		BPHYT_RS00195	0.89	-0.1
52,253	+		BPHYT_RS00195	0.89	-0.5
52,253	+		BPHYT_RS00195	0.89	+0.0
52,254	-		BPHYT_RS00195	0.90	+0.5
52,254	-		BPHYT_RS00195	0.90	-0.7
52,254	-		BPHYT_RS00195	0.90	-2.7
52,501	-				+1.6
52,597	-				+1.4
52,616	-				-0.3
52,729	+				-0.2
52,729	+				+0.2
52,759	+				-1.8
52,759	+				+0.7
52,983	-				-2.2
52,993	+				-0.9
52,993	+				+2.0
53,276	-				-0.1
53,322	+		BPHYT_RS00200	0.12	-0.4
53,323	-		BPHYT_RS00200	0.12	-0.2