Experiment: Phenylacetic 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00110 and BPHYT_RS00115 are separated by 5 nucleotides BPHYT_RS00115 and BPHYT_RS00120 are separated by 64 nucleotides BPHYT_RS00120 and BPHYT_RS00125 are separated by 334 nucleotides
BPHYT_RS00110: BPHYT_RS00110 - ethanolamine ammonia-lyase small subunit, at 32,823 to 33,620
_RS00110
BPHYT_RS00115: BPHYT_RS00115 - acetaldehyde dehydrogenase, at 33,626 to 34,021
_RS00115
BPHYT_RS00120: BPHYT_RS00120 - aldehyde dehydrogenase, at 34,086 to 35,606
_RS00120
BPHYT_RS00125: BPHYT_RS00125 - AraC family transcriptional regulator, at 35,941 to 36,990
_RS00125
Position (kb) 34
35
36 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 33.393 kb on + strand, within BPHYT_RS00110 at 33.492 kb on + strand, within BPHYT_RS00110 at 33.618 kb on + strand at 33.710 kb on + strand, within BPHYT_RS00115 at 33.813 kb on + strand, within BPHYT_RS00115 at 34.112 kb on + strand at 34.114 kb on + strand at 34.114 kb on + strand at 34.115 kb on - strand at 34.115 kb on - strand at 34.232 kb on - strand at 34.325 kb on - strand, within BPHYT_RS00120 at 34.332 kb on - strand, within BPHYT_RS00120 at 34.456 kb on + strand, within BPHYT_RS00120 at 34.457 kb on - strand, within BPHYT_RS00120 at 34.457 kb on - strand, within BPHYT_RS00120 at 34.544 kb on - strand, within BPHYT_RS00120 at 34.544 kb on - strand, within BPHYT_RS00120 at 34.686 kb on + strand, within BPHYT_RS00120 at 34.686 kb on + strand, within BPHYT_RS00120 at 34.763 kb on - strand, within BPHYT_RS00120 at 34.763 kb on - strand, within BPHYT_RS00120 at 34.763 kb on - strand, within BPHYT_RS00120 at 35.161 kb on + strand, within BPHYT_RS00120 at 35.524 kb on - strand at 35.637 kb on - strand at 35.637 kb on - strand at 35.638 kb on + strand at 35.650 kb on + strand at 35.651 kb on - strand at 35.652 kb on + strand at 35.653 kb on - strand at 35.721 kb on + strand at 35.722 kb on - strand at 35.722 kb on - strand at 35.722 kb on - strand at 35.741 kb on + strand at 35.741 kb on + strand at 35.741 kb on + strand at 35.742 kb on - strand at 36.073 kb on + strand, within BPHYT_RS00125 at 36.254 kb on + strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125
Per-strain Table
Position Strand Gene LocusTag Fraction Phenylacetic 5 mM (C) remove 33,393 + BPHYT_RS00110 0.71 +0.2 33,492 + BPHYT_RS00110 0.84 +0.0 33,618 + +0.6 33,710 + BPHYT_RS00115 0.21 -1.2 33,813 + BPHYT_RS00115 0.47 -1.0 34,112 + -1.1 34,114 + -1.2 34,114 + +1.8 34,115 - +0.4 34,115 - +1.8 34,232 - -0.8 34,325 - BPHYT_RS00120 0.16 -0.6 34,332 - BPHYT_RS00120 0.16 +0.1 34,456 + BPHYT_RS00120 0.24 +0.2 34,457 - BPHYT_RS00120 0.24 -1.0 34,457 - BPHYT_RS00120 0.24 -0.8 34,544 - BPHYT_RS00120 0.30 +0.2 34,544 - BPHYT_RS00120 0.30 -0.4 34,686 + BPHYT_RS00120 0.39 +1.3 34,686 + BPHYT_RS00120 0.39 -3.3 34,763 - BPHYT_RS00120 0.45 -0.0 34,763 - BPHYT_RS00120 0.45 -0.0 34,763 - BPHYT_RS00120 0.45 -0.8 35,161 + BPHYT_RS00120 0.71 +0.0 35,524 - -0.2 35,637 - +0.0 35,637 - +0.5 35,638 + +1.8 35,650 + -0.6 35,651 - -1.2 35,652 + -3.8 35,653 - +0.7 35,721 + +0.3 35,722 - +0.8 35,722 - -0.4 35,722 - +0.2 35,741 + +1.1 35,741 + -0.6 35,741 + -2.9 35,742 - +0.1 36,073 + BPHYT_RS00125 0.13 -1.5 36,254 + BPHYT_RS00125 0.30 +0.3 36,255 - BPHYT_RS00125 0.30 -1.1 36,255 - BPHYT_RS00125 0.30 +0.2
Or see this region's nucleotide sequence