Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2904

Experiment: Varel_Bryant_medium_Glucose with Cefoxitin 0.0125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Cefoxitin 0.0125 mM
3,633,227	-		BT2903	0.28	-1.6
3,633,227	-		BT2903	0.28	-0.4
3,633,283	+		BT2903	0.33	-0.2
3,633,298	+		BT2903	0.34	-1.5
3,633,302	+		BT2903	0.34	-0.9
3,633,302	+		BT2903	0.34	+2.0
3,633,321	+		BT2903	0.36	-2.4
3,633,322	-		BT2903	0.36	+0.6
3,633,339	+		BT2903	0.37	-0.6
3,633,364	+		BT2903	0.39	+1.6
3,633,371	+		BT2903	0.40	-1.0
3,633,371	+		BT2903	0.40	-0.5
3,633,371	+		BT2903	0.40	+0.6
3,633,372	-		BT2903	0.40	-1.5
3,633,387	-		BT2903	0.41	-1.4
3,633,391	-		BT2903	0.42	+1.0
3,633,437	+		BT2903	0.46	-2.4
3,633,445	+		BT2903	0.46	-0.0
3,633,447	+		BT2903	0.46	-1.7
3,633,447	+		BT2903	0.46	-1.5
3,633,449	+		BT2903	0.47	-1.4
3,633,463	+		BT2903	0.48	-0.4
3,633,464	-		BT2903	0.48	-0.0
3,633,486	+		BT2903	0.50	+1.0
3,633,553	+		BT2903	0.55	-1.4
3,633,553	+		BT2903	0.55	-1.3
3,633,554	-		BT2903	0.55	-0.0
3,633,560	+		BT2903	0.56	-1.9
3,633,573	+		BT2903	0.57	+0.6
3,633,596	-		BT2903	0.59	+1.6
3,633,648	+		BT2903	0.63	-1.2
3,633,650	+		BT2903	0.63	-1.0
3,633,665	-		BT2903	0.64	-0.4
3,633,719	+		BT2903	0.69	-0.0
3,633,720	-		BT2903	0.69	-3.5
3,633,720	-		BT2903	0.69	-1.6
3,633,720	-		BT2903	0.69	-0.8
3,633,736	+		BT2903	0.70	-0.0
3,633,737	-		BT2903	0.70	+0.6
3,633,793	+		BT2903	0.75	-1.6
3,633,793	+		BT2903	0.75	-1.3
3,633,828	+		BT2903	0.78	-0.2
3,633,873	+		BT2903	0.82	-2.6
3,633,888	+		BT2903	0.83	-2.6
3,633,889	-		BT2903	0.83	-1.2
3,633,889	-		BT2903	0.83	-0.0
3,633,919	-		BT2903	0.85	-1.0
3,633,923	+		BT2903	0.86	-1.9
3,633,923	+		BT2903	0.86	-0.4
3,633,923	+		BT2903	0.86	-1.9
3,633,965	+		BT2903	0.89	-2.3
3,633,966	-		BT2903	0.89	-1.9
3,634,010	+				-1.6
3,634,011	-				-3.8
3,634,040	+				-1.8
3,634,041	-				-2.1
3,634,071	-				-0.0
3,634,072	+				-0.3
3,634,072	+				-1.5
3,634,084	+				-1.9
3,634,178	+				-1.3
3,634,178	+				-0.6
3,634,182	+				-0.4
3,634,193	+				-2.4
3,634,198	-				-1.5
3,634,206	+				-1.4
3,634,211	+				-1.6
3,634,234	-				-2.0
3,634,257	+				-0.9
3,634,258	-				-2.8
3,634,291	+		BT2904	0.10	-2.8
3,634,367	+		BT2904	0.14	-2.8
3,634,380	+		BT2904	0.15	-3.2
3,634,399	+		BT2904	0.16	-1.4
3,634,400	-		BT2904	0.16	-1.0
3,634,418	-		BT2904	0.17	-2.2
3,634,426	+		BT2904	0.17	-3.0
3,634,457	+		BT2904	0.19	-0.0
3,634,458	-		BT2904	0.19	-0.6
3,634,458	-		BT2904	0.19	-2.8
3,634,461	+		BT2904	0.19	+1.0
3,634,461	+		BT2904	0.19	-0.0
3,634,463	+		BT2904	0.19	-1.6
3,634,529	+		BT2904	0.23	-0.2
3,634,531	+		BT2904	0.23	-1.6
3,634,532	-		BT2904	0.23	-0.7
3,634,532	-		BT2904	0.23	-0.0
3,634,562	+		BT2904	0.24	-0.9
3,634,562	+		BT2904	0.24	-1.0
3,634,562	+		BT2904	0.24	-0.6
3,634,563	-		BT2904	0.24	-0.0
3,634,563	-		BT2904	0.24	-2.0
3,634,576	+		BT2904	0.25	-1.0
3,634,628	+		BT2904	0.28	-1.0
3,634,643	+		BT2904	0.28	-0.0
3,634,650	+		BT2904	0.29	-1.5
3,634,696	-		BT2904	0.31	-1.0
3,634,719	+		BT2904	0.32	-2.0
3,634,730	+		BT2904	0.33	-1.2
3,634,730	+		BT2904	0.33	-2.6
3,634,803	+		BT2904	0.37	-2.7
3,634,804	-		BT2904	0.37	-2.0
3,634,804	-		BT2904	0.37	-1.6
3,634,804	-		BT2904	0.37	-0.0
3,634,823	+		BT2904	0.38	-2.6
3,634,823	+		BT2904	0.38	-0.0
3,634,823	+		BT2904	0.38	-2.0
3,634,824	-		BT2904	0.38	-0.0
3,634,827	+		BT2904	0.38	-3.0
3,634,867	-		BT2904	0.40	-1.8
3,634,868	+		BT2904	0.40	-1.0
3,634,965	+		BT2904	0.45	-2.1
3,634,965	+		BT2904	0.45	-1.5
3,635,017	+		BT2904	0.48	-0.9
3,635,032	+		BT2904	0.49	-1.8
3,635,101	+		BT2904	0.52	-0.7
3,635,142	+		BT2904	0.54	-2.5
3,635,142	+		BT2904	0.54	-2.8
3,635,143	-		BT2904	0.54	-2.0
3,635,146	+		BT2904	0.55	-1.9
3,635,156	+		BT2904	0.55	-2.8
3,635,237	+		BT2904	0.59	+0.5
3,635,239	+		BT2904	0.59	-0.5
3,635,240	-		BT2904	0.59	-0.5
3,635,326	+		BT2904	0.64	-1.4
3,635,327	-		BT2904	0.64	-2.0
3,635,330	-		BT2904	0.64	-2.0
3,635,334	+		BT2904	0.64	-0.9
3,635,343	+		BT2904	0.65	-0.0
3,635,344	-				-0.0
3,635,397	+		BT2904	0.68	-4.9
3,635,428	+		BT2904	0.69	-2.0
3,635,442	+		BT2904	0.70	-0.0
3,635,442	+		BT2904	0.70	-2.8
3,635,445	-		BT2904	0.70	-1.5
3,635,454	+		BT2904	0.71	-1.4
3,635,454	+		BT2904	0.71	-3.7
3,635,455	-		BT2904	0.71	-1.9
3,635,461	+		BT2904	0.71	-1.4
3,635,461	+		BT2904	0.71	-2.2
3,635,540	+		BT2904	0.75	+1.0
3,635,541	-		BT2904	0.75	-2.7
3,635,541	-		BT2904	0.75	-1.1
3,635,541	-		BT2904	0.75	-0.9
3,635,565	-		BT2904	0.76	+0.7
3,635,612	+		BT2904	0.79	+0.2
3,635,612	+		BT2904	0.79	-1.6
3,635,648	-		BT2904	0.81	-2.0
3,635,669	-		BT2904	0.82	-0.9
3,635,777	+		BT2904	0.87	-0.5
3,635,791	-		BT2904	0.88	-1.4
3,635,802	-		BT2904	0.89	-0.6
3,635,986	+				+0.2
3,636,048	-				-0.6
3,636,087	+				-0.4
3,636,087	+				-1.1
3,636,135	+				-0.0
3,636,140	+				-2.4
3,636,206	+				-1.5
3,636,206	+				-1.4
3,636,207	-				+0.2
3,636,219	+				-1.5
3,636,263	+				-1.0
3,636,275	+				-0.9
3,636,319	+				-1.9
3,636,319	+				-1.5
3,636,320	-				-2.0
3,636,323	+				-1.6
3,636,346	+				-0.8
3,636,346	+				-0.9
3,636,346	+				-2.4
3,636,388	+		BT2905	0.11	-0.0
3,636,427	-		BT2905	0.12	-1.0
3,636,483	+		BT2905	0.14	+1.5
3,636,484	-		BT2905	0.14	-1.0
3,636,484	-		BT2905	0.14	-1.0
3,636,484	-		BT2905	0.14	-1.8
3,636,497	+		BT2905	0.15	-1.1
3,636,527	+		BT2905	0.16	-1.0
3,636,527	+		BT2905	0.16	-2.5
3,636,542	+		BT2905	0.16	-2.0
3,636,561	+		BT2905	0.17	-0.4
3,636,561	+		BT2905	0.17	-0.0
3,636,562	-		BT2905	0.17	+0.7
3,636,590	+		BT2905	0.17	-0.5
3,636,603	-		BT2905	0.18	-1.0
3,636,604	+		BT2905	0.18	-1.2
3,636,625	+		BT2905	0.19	-1.0
3,636,625	+		BT2905	0.19	-1.6
3,636,625	+		BT2905	0.19	-0.4
3,636,626	-		BT2905	0.19	-1.0
3,636,626	-		BT2905	0.19	-1.4
3,636,692	+		BT2905	0.21	-1.0
3,636,692	+		BT2905	0.21	-2.6
3,636,692	+		BT2905	0.21	-1.0
3,636,692	+		BT2905	0.21	-2.0
3,636,693	-		BT2905	0.21	+0.5
3,636,693	-		BT2905	0.21	-0.0
3,636,693	-		BT2905	0.21	-1.5
3,636,741	+		BT2905	0.22	-0.8
3,636,811	+		BT2905	0.24	-1.8
3,636,850	+		BT2905	0.26	-0.0
3,636,850	+		BT2905	0.26	-1.2
3,636,867	+		BT2905	0.26	-0.0
3,636,868	-		BT2905	0.26	-1.6
3,636,891	+		BT2905	0.27	-1.7
3,636,891	+		BT2905	0.27	-3.6
3,636,896	+		BT2905	0.27	-0.2
3,636,897	-		BT2905	0.27	+1.0
3,636,904	-		BT2905	0.27	-1.0