Experiment: Formate/Acetate-Sulfite (60/5-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0261 and DVU0262 are separated by 3 nucleotides DVU0262 and tmcA are separated by 21 nucleotides tmcA and tmcB are separated by 25 nucleotides
DVU0261: DVU0261 - universal stress protein family (TIGR), at 304,509 to 305,435
DVU0261
DVU0262: DVU0262 - hypothetical protein (TIGR), at 305,439 to 305,993
DVU0262
DVU0263: tmcA - Transmembrane complex, tetraheme cytochrome c3 (Shelley Haveman), at 306,015 to 306,395
tmcA
DVU0264: tmcB - Transmembrane complex, ferredoxin, 2 [4Fe-4S] (Shelley Haveman), at 306,421 to 307,740
tmcB
Position (kb) 306
307 Strain fitness (log2 ratio) -1
0
1 at 305.027 kb on - strand, within DVU0261 at 305.031 kb on + strand, within DVU0261 at 305.034 kb on - strand, within DVU0261 at 305.107 kb on - strand, within DVU0261 at 305.107 kb on - strand, within DVU0261 at 305.127 kb on + strand, within DVU0261 at 305.149 kb on + strand, within DVU0261 at 305.179 kb on - strand, within DVU0261 at 305.198 kb on + strand, within DVU0261 at 305.253 kb on + strand, within DVU0261 at 305.284 kb on + strand, within DVU0261 at 305.298 kb on - strand, within DVU0261 at 305.372 kb on - strand at 305.398 kb on + strand at 305.508 kb on + strand, within DVU0262 at 305.562 kb on - strand, within DVU0262 at 305.618 kb on - strand, within DVU0262 at 305.694 kb on - strand, within DVU0262 at 305.700 kb on - strand, within DVU0262 at 305.742 kb on - strand, within DVU0262 at 305.750 kb on - strand, within DVU0262 at 305.751 kb on - strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.797 kb on + strand, within DVU0262 at 305.797 kb on + strand, within DVU0262 at 305.815 kb on - strand, within DVU0262 at 305.859 kb on - strand, within DVU0262 at 305.914 kb on + strand, within DVU0262 at 305.978 kb on + strand at 305.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/5-20 mM) remove 305,027 - DVU0261 0.56 +0.8 305,031 + DVU0261 0.56 -0.9 305,034 - DVU0261 0.57 -1.6 305,107 - DVU0261 0.65 -0.7 305,107 - DVU0261 0.65 -0.1 305,127 + DVU0261 0.67 -0.3 305,149 + DVU0261 0.69 -1.2 305,179 - DVU0261 0.72 -0.2 305,198 + DVU0261 0.74 +0.1 305,253 + DVU0261 0.80 +0.6 305,284 + DVU0261 0.84 -0.4 305,298 - DVU0261 0.85 -0.5 305,372 - -0.4 305,398 + -0.2 305,508 + DVU0262 0.12 +1.0 305,562 - DVU0262 0.22 -1.3 305,618 - DVU0262 0.32 -0.6 305,694 - DVU0262 0.46 +0.1 305,700 - DVU0262 0.47 -1.3 305,742 - DVU0262 0.55 -1.6 305,750 - DVU0262 0.56 +1.0 305,751 - DVU0262 0.56 -1.1 305,775 + DVU0262 0.61 +0.0 305,775 + DVU0262 0.61 -0.6 305,775 + DVU0262 0.61 +0.1 305,775 + DVU0262 0.61 -0.2 305,775 + DVU0262 0.61 -0.7 305,775 + DVU0262 0.61 -0.6 305,775 + DVU0262 0.61 +0.4 305,797 + DVU0262 0.65 +0.8 305,797 + DVU0262 0.65 -0.5 305,815 - DVU0262 0.68 -0.3 305,859 - DVU0262 0.76 -0.5 305,914 + DVU0262 0.86 -0.1 305,978 + -1.1 305,986 - +0.4
Or see this region's nucleotide sequence