Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2240

Experiment: Formate/Acetate-Sulfite (60/5-20 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfite (60/5-20 mM)
2,331,401	-		DVU2239	0.32	-0.1
2,331,451	-		DVU2239	0.36	-0.2
2,331,465	+		DVU2239	0.37	+0.3
2,331,465	+		DVU2239	0.37	+0.6
2,331,471	-		DVU2239	0.37	+0.4
2,331,499	+		DVU2239	0.39	-0.1
2,331,520	+		DVU2239	0.40	+0.8
2,331,531	+		DVU2239	0.41	-0.9
2,331,565	-		DVU2239	0.43	-0.0
2,331,575	+		DVU2239	0.44	-0.2
2,331,575	+		DVU2239	0.44	-0.1
2,331,658	+		DVU2239	0.50	+0.2
2,331,689	+		DVU2239	0.52	-0.1
2,331,747	+		DVU2239	0.56	-0.8
2,331,755	-		DVU2239	0.57	+0.1
2,331,788	-		DVU2239	0.59	+0.5
2,331,788	-		DVU2239	0.59	-0.6
2,331,906	-		DVU2239	0.67	-0.1
2,331,999	-		DVU2239	0.73	-0.1
2,332,044	+		DVU2239	0.77	-0.0
2,332,076	+		DVU2239	0.79	+0.6
2,332,137	+		DVU2239	0.83	+0.2
2,332,216	+		DVU2239	0.88	-0.2
2,332,249	-				-0.2
2,332,484	+				-0.7
2,332,492	-				-0.8
2,332,600	+		DVU2240	0.13	-0.5
2,332,683	-		DVU2240	0.18	-1.0
2,332,782	+		DVU2240	0.24	-1.4
2,332,797	+		DVU2240	0.25	-1.1
2,332,832	+		DVU2240	0.27	-0.2
2,332,832	+		DVU2240	0.27	+0.1
2,332,840	-		DVU2240	0.28	-1.0
2,333,010	+		DVU2240	0.38	-1.3
2,333,018	-		DVU2240	0.38	-1.3
2,333,104	+		DVU2240	0.44	-1.1
2,333,182	+		DVU2240	0.48	-0.8
2,333,298	-		DVU2240	0.55	-0.9
2,333,308	-		DVU2240	0.56	-0.9
2,333,361	+		DVU2240	0.59	-1.1
2,333,385	+		DVU2240	0.61	+0.0
2,333,598	+		DVU2240	0.74	-1.2
2,333,626	-		DVU2240	0.75	-0.6
2,333,730	+		DVU2240	0.82	-0.9
2,333,806	+		DVU2240	0.86	-1.1
2,333,814	-		DVU2240	0.87	-0.7
2,333,842	+		DVU2240	0.88	-0.9
2,333,845	+		DVU2240	0.89	-0.9
2,333,864	-		DVU2240	0.90	-0.6
2,333,920	-				-1.1
2,333,971	+				-0.7
2,334,007	-				-1.2
2,334,016	+				-0.3
2,334,061	+				-0.2
2,334,061	+				-0.7
2,334,131	-				+1.2
2,334,223	-	pdxA	DVU2241	0.15	-0.6
2,334,223	-	pdxA	DVU2241	0.15	-0.1
2,334,237	-	pdxA	DVU2241	0.16	-0.1
2,334,274	+	pdxA	DVU2241	0.19	-0.2
2,334,349	+	pdxA	DVU2241	0.26	-0.6
2,334,362	-	pdxA	DVU2241	0.27	-0.9
2,334,364	-	pdxA	DVU2241	0.27	-1.4
2,334,409	-	pdxA	DVU2241	0.31	+0.0
2,334,411	+	pdxA	DVU2241	0.31	-0.4
2,334,453	+	pdxA	DVU2241	0.34	-0.7
2,334,472	-	pdxA	DVU2241	0.36	-0.3
2,334,539	+	pdxA	DVU2241	0.41	-0.2
2,334,566	+	pdxA	DVU2241	0.43	-0.2
2,334,574	-	pdxA	DVU2241	0.44	+0.8
2,334,576	+	pdxA	DVU2241	0.44	-0.8
2,334,658	+	pdxA	DVU2241	0.51	+0.2
2,334,658	+	pdxA	DVU2241	0.51	-0.4
2,334,666	-	pdxA	DVU2241	0.52	-0.3
2,334,666	-	pdxA	DVU2241	0.52	-0.4
2,334,708	-	pdxA	DVU2241	0.55	-0.7
2,334,719	-	pdxA	DVU2241	0.56	-0.5
2,334,779	+	pdxA	DVU2241	0.61	-1.2
2,334,787	-	pdxA	DVU2241	0.62	-0.8
2,334,787	-	pdxA	DVU2241	0.62	-0.4
2,334,797	-	pdxA	DVU2241	0.62	-0.2
2,334,985	+	pdxA	DVU2241	0.78	+0.3
2,334,993	-	pdxA	DVU2241	0.78	-0.1