Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_663 and Pf6N2E2_664 are separated by 342 nucleotides Pf6N2E2_664 and Pf6N2E2_665 are separated by 2 nucleotides
Pf6N2E2_663 - Transcriptional activator of acetoin dehydrogenase operon AcoR, at 766,744 to 768,609
_663
Pf6N2E2_664 - Acetoin catabolism protein X, at 768,952 to 770,025
_664
Pf6N2E2_665 - Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-), at 770,028 to 771,005
_665
Position (kb) 768
769
770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 768.248 kb on + strand, within Pf6N2E2_663 at 768.609 kb on + strand at 768.610 kb on - strand at 768.649 kb on + strand at 768.887 kb on - strand at 768.887 kb on - strand at 768.890 kb on - strand at 768.904 kb on + strand at 768.905 kb on - strand at 768.905 kb on - strand at 769.432 kb on + strand, within Pf6N2E2_664 at 769.433 kb on - strand, within Pf6N2E2_664 at 769.433 kb on - strand, within Pf6N2E2_664 at 769.939 kb on + strand at 770.155 kb on - strand, within Pf6N2E2_665 at 770.155 kb on - strand, within Pf6N2E2_665 at 770.289 kb on + strand, within Pf6N2E2_665 at 770.289 kb on + strand, within Pf6N2E2_665 at 770.290 kb on - strand, within Pf6N2E2_665 at 770.560 kb on - strand, within Pf6N2E2_665 at 770.934 kb on + strand at 770.988 kb on + strand at 770.989 kb on - strand at 770.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 768,248 + Pf6N2E2_663 0.81 -0.9 768,609 + -0.2 768,610 - +1.2 768,649 + +0.5 768,887 - -0.1 768,887 - +0.4 768,890 - +0.9 768,904 + +1.1 768,905 - +1.2 768,905 - -2.2 769,432 + Pf6N2E2_664 0.45 +1.0 769,433 - Pf6N2E2_664 0.45 +0.3 769,433 - Pf6N2E2_664 0.45 +1.0 769,939 + +1.7 770,155 - Pf6N2E2_665 0.13 -3.3 770,155 - Pf6N2E2_665 0.13 +0.2 770,289 + Pf6N2E2_665 0.27 -1.6 770,289 + Pf6N2E2_665 0.27 -0.3 770,290 - Pf6N2E2_665 0.27 -3.2 770,560 - Pf6N2E2_665 0.54 +2.5 770,934 + -0.8 770,988 + +1.4 770,989 - -0.2 770,998 - -1.6
Or see this region's nucleotide sequence