Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5167 and Pf6N2E2_5168 are separated by 223 nucleotides Pf6N2E2_5168 and Pf6N2E2_5169 are separated by 233 nucleotides Pf6N2E2_5169 and Pf6N2E2_5170 are separated by 87 nucleotides
Pf6N2E2_5167 - Lipoprotein, putative, at 5,955,365 to 5,956,219
_5167
Pf6N2E2_5168 - Regulator of competence-specific genes, at 5,956,443 to 5,956,715
_5168
Pf6N2E2_5169 - FIG00954216: hypothetical protein, at 5,956,949 to 5,957,290
_5169
Pf6N2E2_5170 - FIG00955330: hypothetical protein, at 5,957,378 to 5,958,934
_5170
Position (kb) 5956
5957
5958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5956.149 kb on - strand at 5956.149 kb on - strand at 5956.149 kb on - strand at 5956.158 kb on - strand at 5956.184 kb on + strand at 5956.185 kb on - strand at 5956.225 kb on + strand at 5956.225 kb on + strand at 5956.226 kb on - strand at 5956.272 kb on + strand at 5956.288 kb on + strand at 5956.288 kb on + strand at 5956.288 kb on + strand at 5956.289 kb on - strand at 5956.289 kb on - strand at 5956.387 kb on + strand at 5956.451 kb on + strand at 5956.452 kb on - strand at 5956.452 kb on - strand at 5956.452 kb on - strand at 5956.452 kb on - strand at 5956.452 kb on - strand at 5956.481 kb on + strand, within Pf6N2E2_5168 at 5956.482 kb on - strand, within Pf6N2E2_5168 at 5956.552 kb on + strand, within Pf6N2E2_5168 at 5956.552 kb on + strand, within Pf6N2E2_5168 at 5956.552 kb on + strand, within Pf6N2E2_5168 at 5956.553 kb on - strand, within Pf6N2E2_5168 at 5956.553 kb on - strand, within Pf6N2E2_5168 at 5956.627 kb on - strand, within Pf6N2E2_5168 at 5956.769 kb on + strand at 5956.770 kb on - strand at 5956.780 kb on - strand at 5956.780 kb on - strand at 5956.823 kb on + strand at 5956.823 kb on + strand at 5956.823 kb on + strand at 5956.823 kb on + strand at 5956.823 kb on + strand at 5956.824 kb on - strand at 5956.824 kb on - strand at 5956.824 kb on - strand at 5956.863 kb on + strand at 5956.863 kb on + strand at 5956.864 kb on - strand at 5956.864 kb on - strand at 5956.963 kb on - strand at 5957.028 kb on + strand, within Pf6N2E2_5169 at 5957.028 kb on + strand, within Pf6N2E2_5169 at 5957.029 kb on - strand, within Pf6N2E2_5169 at 5957.029 kb on - strand, within Pf6N2E2_5169 at 5957.029 kb on - strand, within Pf6N2E2_5169 at 5957.029 kb on - strand, within Pf6N2E2_5169 at 5957.029 kb on - strand, within Pf6N2E2_5169 at 5957.119 kb on - strand, within Pf6N2E2_5169 at 5957.256 kb on + strand at 5957.256 kb on + strand at 5957.257 kb on - strand at 5957.257 kb on - strand at 5957.295 kb on + strand at 5957.375 kb on + strand at 5957.375 kb on + strand at 5957.376 kb on - strand at 5957.376 kb on - strand at 5957.379 kb on + strand at 5957.379 kb on + strand at 5957.379 kb on + strand at 5957.379 kb on + strand at 5957.379 kb on + strand at 5957.673 kb on + strand, within Pf6N2E2_5170 at 5957.673 kb on + strand, within Pf6N2E2_5170 at 5957.673 kb on + strand, within Pf6N2E2_5170 at 5957.673 kb on + strand, within Pf6N2E2_5170 at 5957.673 kb on + strand, within Pf6N2E2_5170 at 5957.673 kb on + strand, within Pf6N2E2_5170 at 5957.673 kb on + strand, within Pf6N2E2_5170 at 5957.674 kb on - strand, within Pf6N2E2_5170 at 5957.674 kb on - strand, within Pf6N2E2_5170 at 5957.674 kb on - strand, within Pf6N2E2_5170 at 5957.742 kb on + strand, within Pf6N2E2_5170 at 5957.743 kb on - strand, within Pf6N2E2_5170 at 5957.743 kb on - strand, within Pf6N2E2_5170 at 5957.743 kb on - strand, within Pf6N2E2_5170 at 5957.767 kb on + strand, within Pf6N2E2_5170 at 5957.767 kb on + strand, within Pf6N2E2_5170 at 5957.767 kb on + strand, within Pf6N2E2_5170 at 5957.767 kb on + strand, within Pf6N2E2_5170 at 5957.768 kb on - strand, within Pf6N2E2_5170 at 5957.769 kb on + strand, within Pf6N2E2_5170 at 5957.769 kb on + strand, within Pf6N2E2_5170 at 5957.769 kb on + strand, within Pf6N2E2_5170 at 5957.770 kb on - strand, within Pf6N2E2_5170 at 5957.770 kb on - strand, within Pf6N2E2_5170 at 5957.864 kb on + strand, within Pf6N2E2_5170 at 5957.864 kb on + strand, within Pf6N2E2_5170 at 5957.946 kb on + strand, within Pf6N2E2_5170 at 5957.946 kb on + strand, within Pf6N2E2_5170 at 5957.967 kb on + strand, within Pf6N2E2_5170 at 5957.967 kb on + strand, within Pf6N2E2_5170 at 5957.967 kb on + strand, within Pf6N2E2_5170 at 5957.968 kb on - strand, within Pf6N2E2_5170 at 5958.063 kb on + strand, within Pf6N2E2_5170 at 5958.063 kb on + strand, within Pf6N2E2_5170 at 5958.063 kb on + strand, within Pf6N2E2_5170 at 5958.064 kb on - strand, within Pf6N2E2_5170 at 5958.064 kb on - strand, within Pf6N2E2_5170 at 5958.071 kb on - strand, within Pf6N2E2_5170 at 5958.071 kb on - strand, within Pf6N2E2_5170 at 5958.071 kb on - strand, within Pf6N2E2_5170 at 5958.072 kb on + strand, within Pf6N2E2_5170 at 5958.072 kb on + strand, within Pf6N2E2_5170 at 5958.072 kb on + strand, within Pf6N2E2_5170 at 5958.072 kb on + strand, within Pf6N2E2_5170 at 5958.072 kb on + strand, within Pf6N2E2_5170 at 5958.073 kb on - strand, within Pf6N2E2_5170 at 5958.073 kb on - strand, within Pf6N2E2_5170 at 5958.073 kb on - strand at 5958.073 kb on - strand, within Pf6N2E2_5170 at 5958.099 kb on + strand, within Pf6N2E2_5170 at 5958.099 kb on + strand, within Pf6N2E2_5170 at 5958.120 kb on + strand, within Pf6N2E2_5170 at 5958.120 kb on + strand, within Pf6N2E2_5170 at 5958.121 kb on - strand, within Pf6N2E2_5170 at 5958.198 kb on + strand, within Pf6N2E2_5170 at 5958.198 kb on + strand, within Pf6N2E2_5170 at 5958.198 kb on + strand, within Pf6N2E2_5170 at 5958.199 kb on - strand, within Pf6N2E2_5170
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 5,956,149 - +1.0 5,956,149 - -1.3 5,956,149 - -0.7 5,956,158 - +0.8 5,956,184 + -1.7 5,956,185 - +0.9 5,956,225 + +0.6 5,956,225 + +1.1 5,956,226 - -1.1 5,956,272 + +0.3 5,956,288 + -1.7 5,956,288 + +1.5 5,956,288 + +0.9 5,956,289 - -0.8 5,956,289 - +0.4 5,956,387 + +0.6 5,956,451 + -0.4 5,956,452 - +0.3 5,956,452 - +0.5 5,956,452 - -0.4 5,956,452 - +0.3 5,956,452 - -0.1 5,956,481 + Pf6N2E2_5168 0.14 +1.3 5,956,482 - Pf6N2E2_5168 0.14 -0.0 5,956,552 + Pf6N2E2_5168 0.40 -1.6 5,956,552 + Pf6N2E2_5168 0.40 +1.1 5,956,552 + Pf6N2E2_5168 0.40 +1.0 5,956,553 - Pf6N2E2_5168 0.40 -1.5 5,956,553 - Pf6N2E2_5168 0.40 -0.5 5,956,627 - Pf6N2E2_5168 0.67 -0.5 5,956,769 + +0.4 5,956,770 - -0.2 5,956,780 - +0.9 5,956,780 - +0.8 5,956,823 + +0.6 5,956,823 + +0.4 5,956,823 + +1.6 5,956,823 + +0.9 5,956,823 + +0.4 5,956,824 - +0.9 5,956,824 - -0.2 5,956,824 - -0.5 5,956,863 + +0.1 5,956,863 + -1.3 5,956,864 - +1.7 5,956,864 - +1.2 5,956,963 - -0.6 5,957,028 + Pf6N2E2_5169 0.23 +0.9 5,957,028 + Pf6N2E2_5169 0.23 +1.4 5,957,029 - Pf6N2E2_5169 0.23 -2.4 5,957,029 - Pf6N2E2_5169 0.23 -0.4 5,957,029 - Pf6N2E2_5169 0.23 +0.9 5,957,029 - Pf6N2E2_5169 0.23 +0.5 5,957,029 - Pf6N2E2_5169 0.23 -0.2 5,957,119 - Pf6N2E2_5169 0.50 +1.6 5,957,256 + -0.1 5,957,256 + +1.0 5,957,257 - -0.5 5,957,257 - -1.3 5,957,295 + +0.3 5,957,375 + -0.4 5,957,375 + +1.1 5,957,376 - +0.3 5,957,376 - +0.2 5,957,379 + -2.0 5,957,379 + -0.2 5,957,379 + -0.5 5,957,379 + +0.1 5,957,379 + +0.9 5,957,673 + Pf6N2E2_5170 0.19 +0.6 5,957,673 + Pf6N2E2_5170 0.19 -3.1 5,957,673 + Pf6N2E2_5170 0.19 +0.6 5,957,673 + Pf6N2E2_5170 0.19 +0.0 5,957,673 + Pf6N2E2_5170 0.19 -0.7 5,957,673 + Pf6N2E2_5170 0.19 -1.8 5,957,673 + Pf6N2E2_5170 0.19 -0.6 5,957,674 - Pf6N2E2_5170 0.19 +0.0 5,957,674 - Pf6N2E2_5170 0.19 +1.9 5,957,674 - Pf6N2E2_5170 0.19 -1.4 5,957,742 + Pf6N2E2_5170 0.23 -0.5 5,957,743 - Pf6N2E2_5170 0.23 -0.1 5,957,743 - Pf6N2E2_5170 0.23 +0.3 5,957,743 - Pf6N2E2_5170 0.23 +0.2 5,957,767 + Pf6N2E2_5170 0.25 -0.4 5,957,767 + Pf6N2E2_5170 0.25 +0.2 5,957,767 + Pf6N2E2_5170 0.25 +0.2 5,957,767 + Pf6N2E2_5170 0.25 +0.1 5,957,768 - Pf6N2E2_5170 0.25 +0.5 5,957,769 + Pf6N2E2_5170 0.25 -0.4 5,957,769 + Pf6N2E2_5170 0.25 -0.3 5,957,769 + Pf6N2E2_5170 0.25 +0.0 5,957,770 - Pf6N2E2_5170 0.25 +1.0 5,957,770 - Pf6N2E2_5170 0.25 +0.5 5,957,864 + Pf6N2E2_5170 0.31 -0.9 5,957,864 + Pf6N2E2_5170 0.31 -0.5 5,957,946 + Pf6N2E2_5170 0.36 +0.1 5,957,946 + Pf6N2E2_5170 0.36 -1.3 5,957,967 + Pf6N2E2_5170 0.38 -1.7 5,957,967 + Pf6N2E2_5170 0.38 +1.1 5,957,967 + Pf6N2E2_5170 0.38 -2.1 5,957,968 - Pf6N2E2_5170 0.38 +0.1 5,958,063 + Pf6N2E2_5170 0.44 -0.6 5,958,063 + Pf6N2E2_5170 0.44 -1.2 5,958,063 + Pf6N2E2_5170 0.44 +0.3 5,958,064 - Pf6N2E2_5170 0.44 -1.2 5,958,064 - Pf6N2E2_5170 0.44 +0.7 5,958,071 - Pf6N2E2_5170 0.45 +1.3 5,958,071 - Pf6N2E2_5170 0.45 -0.2 5,958,071 - Pf6N2E2_5170 0.45 +0.8 5,958,072 + Pf6N2E2_5170 0.45 -0.1 5,958,072 + Pf6N2E2_5170 0.45 +0.5 5,958,072 + Pf6N2E2_5170 0.45 -1.8 5,958,072 + Pf6N2E2_5170 0.45 -0.7 5,958,072 + Pf6N2E2_5170 0.45 +0.1 5,958,073 - Pf6N2E2_5170 0.45 -0.4 5,958,073 - Pf6N2E2_5170 0.45 +0.6 5,958,073 - +0.2 5,958,073 - Pf6N2E2_5170 0.45 -1.0 5,958,099 + Pf6N2E2_5170 0.46 -0.9 5,958,099 + Pf6N2E2_5170 0.46 +1.3 5,958,120 + Pf6N2E2_5170 0.48 -1.3 5,958,120 + Pf6N2E2_5170 0.48 +0.2 5,958,121 - Pf6N2E2_5170 0.48 -0.2 5,958,198 + Pf6N2E2_5170 0.53 +0.7 5,958,198 + Pf6N2E2_5170 0.53 +1.2 5,958,198 + Pf6N2E2_5170 0.53 -0.0 5,958,199 - Pf6N2E2_5170 0.53 +0.6
Or see this region's nucleotide sequence