Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4402

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4401 and Pf6N2E2_4402 are separated by 187 nucleotidesPf6N2E2_4402 and Pf6N2E2_4403 are separated by 235 nucleotides Pf6N2E2_4401 - Glycine cleavage system transcriptional activator, at 5,131,901 to 5,132,821 _4401 Pf6N2E2_4402 - Methyl-accepting chemotaxis protein, at 5,133,009 to 5,134,985 _4402 Pf6N2E2_4403 - FIG00963784: hypothetical protein, at 5,135,221 to 5,136,435 _4403 Position (kb) 5133 5134 5135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5132.118 kb on + strand, within Pf6N2E2_4401at 5132.156 kb on - strand, within Pf6N2E2_4401at 5132.340 kb on + strand, within Pf6N2E2_4401at 5132.340 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.705 kb on + strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.706 kb on - strand, within Pf6N2E2_4401at 5132.708 kb on + strand, within Pf6N2E2_4401at 5132.708 kb on + strand, within Pf6N2E2_4401at 5132.708 kb on + strand, within Pf6N2E2_4401at 5132.708 kb on + strand, within Pf6N2E2_4401at 5132.709 kb on - strand, within Pf6N2E2_4401at 5132.709 kb on - strand, within Pf6N2E2_4401at 5132.796 kb on + strandat 5132.797 kb on - strandat 5132.797 kb on - strandat 5132.877 kb on + strandat 5132.878 kb on - strandat 5132.931 kb on + strandat 5132.931 kb on + strandat 5132.931 kb on + strandat 5132.931 kb on + strandat 5132.932 kb on - strandat 5132.932 kb on - strandat 5132.932 kb on - strandat 5132.932 kb on - strandat 5132.932 kb on - strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.935 kb on + strandat 5132.936 kb on - strandat 5132.936 kb on - strandat 5132.936 kb on - strandat 5132.936 kb on - strandat 5132.936 kb on - strandat 5132.936 kb on - strandat 5132.951 kb on - strandat 5132.951 kb on - strandat 5133.043 kb on + strandat 5133.043 kb on + strandat 5133.043 kb on + strandat 5133.044 kb on - strandat 5133.044 kb on - strandat 5133.064 kb on + strandat 5133.185 kb on + strandat 5133.185 kb on + strandat 5133.185 kb on + strandat 5133.185 kb on + strandat 5133.185 kb on + strandat 5133.186 kb on - strandat 5133.186 kb on - strandat 5133.197 kb on + strandat 5133.198 kb on - strandat 5133.198 kb on - strandat 5133.198 kb on - strandat 5133.198 kb on - strandat 5133.431 kb on + strand, within Pf6N2E2_4402at 5133.431 kb on + strand, within Pf6N2E2_4402at 5133.431 kb on + strand, within Pf6N2E2_4402at 5133.431 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.525 kb on + strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.526 kb on - strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.558 kb on + strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.559 kb on - strand, within Pf6N2E2_4402at 5133.571 kb on - strand, within Pf6N2E2_4402at 5133.615 kb on + strand, within Pf6N2E2_4402at 5133.615 kb on + strand, within Pf6N2E2_4402at 5133.615 kb on + strand, within Pf6N2E2_4402at 5133.615 kb on + strand, within Pf6N2E2_4402at 5133.615 kb on + strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.616 kb on - strand, within Pf6N2E2_4402at 5133.619 kb on + strand, within Pf6N2E2_4402at 5133.619 kb on + strand, within Pf6N2E2_4402at 5133.619 kb on + strand, within Pf6N2E2_4402at 5133.619 kb on + strand, within Pf6N2E2_4402at 5133.620 kb on - strand, within Pf6N2E2_4402at 5133.620 kb on - strand, within Pf6N2E2_4402at 5133.630 kb on + strand, within Pf6N2E2_4402at 5133.631 kb on - strand, within Pf6N2E2_4402at 5133.837 kb on + strand, within Pf6N2E2_4402at 5133.837 kb on + strand, within Pf6N2E2_4402at 5133.837 kb on + strand, within Pf6N2E2_4402at 5133.837 kb on + strand, within Pf6N2E2_4402at 5133.929 kb on + strand, within Pf6N2E2_4402at 5134.224 kb on + strand, within Pf6N2E2_4402at 5134.224 kb on + strand, within Pf6N2E2_4402at 5134.224 kb on + strand, within Pf6N2E2_4402at 5134.225 kb on - strand, within Pf6N2E2_4402at 5134.225 kb on - strand, within Pf6N2E2_4402at 5134.448 kb on + strand, within Pf6N2E2_4402at 5134.448 kb on + strand, within Pf6N2E2_4402at 5134.448 kb on + strand, within Pf6N2E2_4402at 5134.448 kb on + strand, within Pf6N2E2_4402at 5134.449 kb on - strand, within Pf6N2E2_4402at 5134.449 kb on - strand, within Pf6N2E2_4402at 5134.449 kb on - strand, within Pf6N2E2_4402at 5134.449 kb on - strand, within Pf6N2E2_4402at 5134.449 kb on - strand, within Pf6N2E2_4402at 5134.631 kb on + strand, within Pf6N2E2_4402at 5134.658 kb on + strand, within Pf6N2E2_4402at 5134.658 kb on + strand, within Pf6N2E2_4402at 5134.659 kb on - strand, within Pf6N2E2_4402at 5135.156 kb on + strandat 5135.290 kb on + strandat 5135.290 kb on + strandat 5135.290 kb on + strandat 5135.290 kb on + strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.291 kb on - strandat 5135.305 kb on - strandat 5135.694 kb on + strand, within Pf6N2E2_4403at 5135.694 kb on + strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.740 kb on + strand, within Pf6N2E2_4403at 5135.740 kb on + strand, within Pf6N2E2_4403at 5135.740 kb on + strand, within Pf6N2E2_4403at 5135.887 kb on + strand, within Pf6N2E2_4403at 5135.888 kb on - strand, within Pf6N2E2_4403at 5135.899 kb on + strand, within Pf6N2E2_4403at 5135.900 kb on - strand, within Pf6N2E2_4403

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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5,132,118 + Pf6N2E2_4401 0.24 -1.2
5,132,156 - Pf6N2E2_4401 0.28 +0.9
5,132,340 + Pf6N2E2_4401 0.48 -0.0
5,132,340 + Pf6N2E2_4401 0.48 +0.9
5,132,705 + Pf6N2E2_4401 0.87 +0.6
5,132,705 + Pf6N2E2_4401 0.87 +0.2
5,132,705 + Pf6N2E2_4401 0.87 +0.7
5,132,705 + Pf6N2E2_4401 0.87 +1.0
5,132,705 + Pf6N2E2_4401 0.87 -0.4
5,132,705 + Pf6N2E2_4401 0.87 +0.4
5,132,705 + Pf6N2E2_4401 0.87 +0.7
5,132,705 + Pf6N2E2_4401 0.87 +0.5
5,132,705 + Pf6N2E2_4401 0.87 +0.8
5,132,705 + Pf6N2E2_4401 0.87 -1.9
5,132,705 + Pf6N2E2_4401 0.87 -0.2
5,132,705 + Pf6N2E2_4401 0.87 -1.6
5,132,705 + Pf6N2E2_4401 0.87 +0.7
5,132,705 + Pf6N2E2_4401 0.87 -0.2
5,132,705 + Pf6N2E2_4401 0.87 +0.7
5,132,706 - Pf6N2E2_4401 0.87 -1.0
5,132,706 - Pf6N2E2_4401 0.87 -0.3
5,132,706 - Pf6N2E2_4401 0.87 +1.0
5,132,706 - Pf6N2E2_4401 0.87 +0.1
5,132,706 - Pf6N2E2_4401 0.87 +0.1
5,132,706 - Pf6N2E2_4401 0.87 +0.5
5,132,706 - Pf6N2E2_4401 0.87 -0.7
5,132,706 - Pf6N2E2_4401 0.87 -0.3
5,132,708 + Pf6N2E2_4401 0.88 -0.8
5,132,708 + Pf6N2E2_4401 0.88 +1.9
5,132,708 + Pf6N2E2_4401 0.88 +0.3
5,132,708 + Pf6N2E2_4401 0.88 +1.4
5,132,709 - Pf6N2E2_4401 0.88 +0.6
5,132,709 - Pf6N2E2_4401 0.88 +0.6
5,132,796 + -1.5
5,132,797 - -0.6
5,132,797 - +0.4
5,132,877 + +0.0
5,132,878 - -2.4
5,132,931 + -1.5
5,132,931 + +0.5
5,132,931 + +1.0
5,132,931 + +1.0
5,132,932 - -0.3
5,132,932 - +0.7
5,132,932 - -1.1
5,132,932 - +1.1
5,132,932 - +1.6
5,132,935 + -0.2
5,132,935 + +0.5
5,132,935 + +0.7
5,132,935 + +0.1
5,132,935 + -1.6
5,132,935 + +0.1
5,132,935 + -0.5
5,132,935 + +1.2
5,132,935 + -1.4
5,132,936 - -0.1
5,132,936 - -0.6
5,132,936 - -0.0
5,132,936 - +1.3
5,132,936 - +0.4
5,132,936 - -0.2
5,132,951 - +0.6
5,132,951 - -1.3
5,133,043 + -0.2
5,133,043 + +0.9
5,133,043 + -1.4
5,133,044 - +0.4
5,133,044 - -0.1
5,133,064 + -0.2
5,133,185 + +0.0
5,133,185 + +1.0
5,133,185 + +0.3
5,133,185 + -0.6
5,133,185 + +0.5
5,133,186 - -0.2
5,133,186 - +1.0
5,133,197 + -1.0
5,133,198 - -1.3
5,133,198 - +0.2
5,133,198 - +0.2
5,133,198 - +0.3
5,133,431 + Pf6N2E2_4402 0.21 +0.9
5,133,431 + Pf6N2E2_4402 0.21 +0.5
5,133,431 + Pf6N2E2_4402 0.21 +0.2
5,133,431 + Pf6N2E2_4402 0.21 +0.3
5,133,525 + Pf6N2E2_4402 0.26 +1.7
5,133,525 + Pf6N2E2_4402 0.26 +0.6
5,133,525 + Pf6N2E2_4402 0.26 +0.0
5,133,525 + Pf6N2E2_4402 0.26 +0.5
5,133,525 + Pf6N2E2_4402 0.26 +1.2
5,133,525 + Pf6N2E2_4402 0.26 +0.7
5,133,526 - Pf6N2E2_4402 0.26 +0.5
5,133,526 - Pf6N2E2_4402 0.26 +0.6
5,133,526 - Pf6N2E2_4402 0.26 -0.3
5,133,526 - Pf6N2E2_4402 0.26 -1.7
5,133,526 - Pf6N2E2_4402 0.26 -1.3
5,133,526 - Pf6N2E2_4402 0.26 +2.1
5,133,526 - Pf6N2E2_4402 0.26 +1.1
5,133,526 - Pf6N2E2_4402 0.26 +2.4
5,133,526 - Pf6N2E2_4402 0.26 -0.1
5,133,526 - Pf6N2E2_4402 0.26 +0.4
5,133,526 - Pf6N2E2_4402 0.26 -0.4
5,133,558 + Pf6N2E2_4402 0.28 +1.2
5,133,558 + Pf6N2E2_4402 0.28 +0.5
5,133,558 + Pf6N2E2_4402 0.28 +0.3
5,133,558 + Pf6N2E2_4402 0.28 +0.9
5,133,558 + Pf6N2E2_4402 0.28 +1.3
5,133,558 + Pf6N2E2_4402 0.28 +0.2
5,133,558 + Pf6N2E2_4402 0.28 -0.3
5,133,558 + Pf6N2E2_4402 0.28 +1.3
5,133,558 + Pf6N2E2_4402 0.28 +0.1
5,133,558 + Pf6N2E2_4402 0.28 +0.0
5,133,558 + Pf6N2E2_4402 0.28 -1.2
5,133,559 - Pf6N2E2_4402 0.28 +0.8
5,133,559 - Pf6N2E2_4402 0.28 -0.3
5,133,559 - Pf6N2E2_4402 0.28 +0.6
5,133,559 - Pf6N2E2_4402 0.28 +1.3
5,133,559 - Pf6N2E2_4402 0.28 -0.4
5,133,559 - Pf6N2E2_4402 0.28 +0.8
5,133,559 - Pf6N2E2_4402 0.28 -0.1
5,133,559 - Pf6N2E2_4402 0.28 +0.4
5,133,559 - Pf6N2E2_4402 0.28 +1.3
5,133,559 - Pf6N2E2_4402 0.28 -0.1
5,133,571 - Pf6N2E2_4402 0.28 -0.1
5,133,615 + Pf6N2E2_4402 0.31 -0.0
5,133,615 + Pf6N2E2_4402 0.31 -3.1
5,133,615 + Pf6N2E2_4402 0.31 +0.8
5,133,615 + Pf6N2E2_4402 0.31 +0.9
5,133,615 + Pf6N2E2_4402 0.31 -3.0
5,133,616 - Pf6N2E2_4402 0.31 +0.2
5,133,616 - Pf6N2E2_4402 0.31 -0.7
5,133,616 - Pf6N2E2_4402 0.31 +0.3
5,133,616 - Pf6N2E2_4402 0.31 -1.6
5,133,616 - Pf6N2E2_4402 0.31 +0.8
5,133,616 - Pf6N2E2_4402 0.31 -0.3
5,133,616 - Pf6N2E2_4402 0.31 -0.2
5,133,616 - Pf6N2E2_4402 0.31 +0.6
5,133,616 - Pf6N2E2_4402 0.31 +0.8
5,133,616 - Pf6N2E2_4402 0.31 +0.7
5,133,619 + Pf6N2E2_4402 0.31 -1.3
5,133,619 + Pf6N2E2_4402 0.31 +0.8
5,133,619 + Pf6N2E2_4402 0.31 +1.4
5,133,619 + Pf6N2E2_4402 0.31 +1.3
5,133,620 - Pf6N2E2_4402 0.31 -0.1
5,133,620 - Pf6N2E2_4402 0.31 -0.4
5,133,630 + Pf6N2E2_4402 0.31 -0.1
5,133,631 - Pf6N2E2_4402 0.31 +1.5
5,133,837 + Pf6N2E2_4402 0.42 -0.5
5,133,837 + Pf6N2E2_4402 0.42 -1.1
5,133,837 + Pf6N2E2_4402 0.42 +0.6
5,133,837 + Pf6N2E2_4402 0.42 -0.9
5,133,929 + Pf6N2E2_4402 0.47 +0.4
5,134,224 + Pf6N2E2_4402 0.61 -0.0
5,134,224 + Pf6N2E2_4402 0.61 +1.1
5,134,224 + Pf6N2E2_4402 0.61 +1.6
5,134,225 - Pf6N2E2_4402 0.62 -0.3
5,134,225 - Pf6N2E2_4402 0.62 +0.3
5,134,448 + Pf6N2E2_4402 0.73 +0.9
5,134,448 + Pf6N2E2_4402 0.73 -2.7
5,134,448 + Pf6N2E2_4402 0.73 -0.3
5,134,448 + Pf6N2E2_4402 0.73 -1.0
5,134,449 - Pf6N2E2_4402 0.73 +1.0
5,134,449 - Pf6N2E2_4402 0.73 +0.7
5,134,449 - Pf6N2E2_4402 0.73 -0.8
5,134,449 - Pf6N2E2_4402 0.73 -0.7
5,134,449 - Pf6N2E2_4402 0.73 -0.6
5,134,631 + Pf6N2E2_4402 0.82 -0.1
5,134,658 + Pf6N2E2_4402 0.83 +0.5
5,134,658 + Pf6N2E2_4402 0.83 +1.0
5,134,659 - Pf6N2E2_4402 0.83 +1.0
5,135,156 + +1.0
5,135,290 + -2.3
5,135,290 + -1.0
5,135,290 + -1.9
5,135,290 + -0.3
5,135,291 - -0.0
5,135,291 - +1.1
5,135,291 - -0.3
5,135,291 - -0.4
5,135,291 - -0.2
5,135,291 - +0.0
5,135,291 - -1.3
5,135,305 - +0.6
5,135,694 + Pf6N2E2_4403 0.39 +0.8
5,135,694 + Pf6N2E2_4403 0.39 -1.9
5,135,695 - Pf6N2E2_4403 0.39 -0.3
5,135,695 - Pf6N2E2_4403 0.39 -0.2
5,135,695 - Pf6N2E2_4403 0.39 +1.8
5,135,695 - Pf6N2E2_4403 0.39 -0.6
5,135,695 - Pf6N2E2_4403 0.39 +0.4
5,135,695 - Pf6N2E2_4403 0.39 +0.2
5,135,695 - Pf6N2E2_4403 0.39 -0.2
5,135,695 - Pf6N2E2_4403 0.39 -0.0
5,135,695 - Pf6N2E2_4403 0.39 -0.9
5,135,740 + Pf6N2E2_4403 0.43 -0.4
5,135,740 + Pf6N2E2_4403 0.43 -0.5
5,135,740 + Pf6N2E2_4403 0.43 -1.7
5,135,887 + Pf6N2E2_4403 0.55 +0.3
5,135,888 - Pf6N2E2_4403 0.55 +1.2
5,135,899 + Pf6N2E2_4403 0.56 -1.1
5,135,900 - Pf6N2E2_4403 0.56 +0.9

Or see this region's nucleotide sequence