Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3967 and HP15_3968 overlap by 4 nucleotides HP15_3968 and HP15_3969 are separated by 31 nucleotides
HP15_3967: HP15_3967 - integral membrane sensor signal transduction histidine kinase, at 4,196,290 to 4,197,702
_3967
HP15_3968: HP15_3968 - two component transcriptional regulator, winged helix family, at 4,197,699 to 4,198,373
_3968
HP15_3969: HP15_3969 - glycosyl transferase, family 39, at 4,198,405 to 4,199,952
_3969
Position (kb)
4197
4198
4199 Strain fitness (log2 ratio)
-1
0
1 at 4196.731 kb on + strand, within HP15_3967 at 4196.739 kb on - strand, within HP15_3967 at 4196.865 kb on + strand, within HP15_3967 at 4196.868 kb on - strand, within HP15_3967 at 4196.917 kb on - strand, within HP15_3967 at 4197.018 kb on - strand, within HP15_3967 at 4197.044 kb on - strand, within HP15_3967 at 4197.140 kb on + strand, within HP15_3967 at 4197.140 kb on + strand, within HP15_3967 at 4197.172 kb on + strand, within HP15_3967 at 4197.270 kb on + strand, within HP15_3967 at 4197.272 kb on - strand, within HP15_3967 at 4197.278 kb on - strand, within HP15_3967 at 4197.399 kb on + strand, within HP15_3967 at 4197.455 kb on - strand, within HP15_3967 at 4197.470 kb on - strand, within HP15_3967 at 4197.474 kb on - strand, within HP15_3967 at 4197.506 kb on - strand, within HP15_3967 at 4197.545 kb on + strand, within HP15_3967 at 4197.552 kb on - strand, within HP15_3967 at 4197.555 kb on + strand, within HP15_3967 at 4197.574 kb on + strand at 4197.716 kb on + strand at 4197.724 kb on + strand at 4197.809 kb on + strand, within HP15_3968 at 4197.809 kb on + strand, within HP15_3968 at 4197.809 kb on + strand, within HP15_3968 at 4197.817 kb on - strand, within HP15_3968 at 4197.817 kb on - strand, within HP15_3968 at 4197.817 kb on - strand, within HP15_3968 at 4197.823 kb on - strand, within HP15_3968 at 4197.844 kb on - strand, within HP15_3968 at 4197.852 kb on - strand, within HP15_3968 at 4197.884 kb on + strand, within HP15_3968 at 4197.901 kb on + strand, within HP15_3968 at 4197.998 kb on + strand, within HP15_3968 at 4198.006 kb on - strand, within HP15_3968 at 4198.114 kb on - strand, within HP15_3968 at 4198.226 kb on - strand, within HP15_3968 at 4198.257 kb on + strand, within HP15_3968 at 4198.281 kb on - strand, within HP15_3968 at 4198.316 kb on - strand at 4198.347 kb on - strand at 4198.567 kb on - strand, within HP15_3969 at 4198.608 kb on + strand, within HP15_3969 at 4198.701 kb on - strand, within HP15_3969 at 4198.707 kb on - strand, within HP15_3969 at 4198.708 kb on - strand, within HP15_3969 at 4198.775 kb on + strand, within HP15_3969 at 4198.797 kb on + strand, within HP15_3969 at 4198.805 kb on - strand, within HP15_3969 at 4198.850 kb on + strand, within HP15_3969 at 4198.862 kb on - strand, within HP15_3969 at 4198.898 kb on - strand, within HP15_3969 at 4198.977 kb on + strand, within HP15_3969 at 4199.004 kb on - strand, within HP15_3969 at 4199.132 kb on - strand, within HP15_3969 at 4199.153 kb on - strand, within HP15_3969 at 4199.246 kb on + strand, within HP15_3969 at 4199.246 kb on + strand, within HP15_3969 at 4199.274 kb on - strand, within HP15_3969
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 4,196,731 + HP15_3967 0.31 -0.1 4,196,739 - HP15_3967 0.32 -0.1 4,196,865 + HP15_3967 0.41 -0.2 4,196,868 - HP15_3967 0.41 -0.8 4,196,917 - HP15_3967 0.44 -0.0 4,197,018 - HP15_3967 0.52 -0.7 4,197,044 - HP15_3967 0.53 +0.5 4,197,140 + HP15_3967 0.60 -0.2 4,197,140 + HP15_3967 0.60 +0.1 4,197,172 + HP15_3967 0.62 -0.0 4,197,270 + HP15_3967 0.69 -0.0 4,197,272 - HP15_3967 0.69 -0.0 4,197,278 - HP15_3967 0.70 +0.6 4,197,399 + HP15_3967 0.78 +0.8 4,197,455 - HP15_3967 0.82 -0.2 4,197,470 - HP15_3967 0.84 -0.2 4,197,474 - HP15_3967 0.84 +0.6 4,197,506 - HP15_3967 0.86 -0.1 4,197,545 + HP15_3967 0.89 -0.3 4,197,552 - HP15_3967 0.89 -0.4 4,197,555 + HP15_3967 0.90 +1.5 4,197,574 + +0.3 4,197,716 + -0.1 4,197,724 + -0.1 4,197,809 + HP15_3968 0.16 +0.9 4,197,809 + HP15_3968 0.16 -0.6 4,197,809 + HP15_3968 0.16 -0.8 4,197,817 - HP15_3968 0.17 -0.1 4,197,817 - HP15_3968 0.17 +0.5 4,197,817 - HP15_3968 0.17 -0.2 4,197,823 - HP15_3968 0.18 +0.9 4,197,844 - HP15_3968 0.21 +0.3 4,197,852 - HP15_3968 0.23 -0.7 4,197,884 + HP15_3968 0.27 +0.3 4,197,901 + HP15_3968 0.30 -0.1 4,197,998 + HP15_3968 0.44 -0.3 4,198,006 - HP15_3968 0.45 -0.3 4,198,114 - HP15_3968 0.61 -0.6 4,198,226 - HP15_3968 0.78 +0.3 4,198,257 + HP15_3968 0.83 -0.4 4,198,281 - HP15_3968 0.86 -0.8 4,198,316 - +0.2 4,198,347 - -0.1 4,198,567 - HP15_3969 0.10 -0.5 4,198,608 + HP15_3969 0.13 -0.3 4,198,701 - HP15_3969 0.19 +0.7 4,198,707 - HP15_3969 0.20 -0.5 4,198,708 - HP15_3969 0.20 +0.3 4,198,775 + HP15_3969 0.24 -0.2 4,198,797 + HP15_3969 0.25 -0.5 4,198,805 - HP15_3969 0.26 +0.0 4,198,850 + HP15_3969 0.29 -0.3 4,198,862 - HP15_3969 0.30 -0.1 4,198,898 - HP15_3969 0.32 +0.9 4,198,977 + HP15_3969 0.37 +0.3 4,199,004 - HP15_3969 0.39 -0.4 4,199,132 - HP15_3969 0.47 -1.0 4,199,153 - HP15_3969 0.48 +0.4 4,199,246 + HP15_3969 0.54 -0.0 4,199,246 + HP15_3969 0.54 +0.2 4,199,274 - HP15_3969 0.56 +0.5
Or see this region's nucleotide sequence