Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3586 and HP15_3587 are separated by 619 nucleotides HP15_3587 and HP15_3588 are separated by 117 nucleotides HP15_3588 and HP15_3589 are separated by 36 nucleotides
HP15_3586: HP15_3586 - membrane protein containing DUF6, transmembrane, at 3,776,271 to 3,777,221
_3586
HP15_3587: HP15_3587 - membrane-associated metal-dependent hydrolase, at 3,777,841 to 3,779,487
_3587
HP15_3588: HP15_3588 - ChaC family protein, at 3,779,605 to 3,780,171
_3588
HP15_3589: HP15_3589 - multiple antibiotic resistance (MarC)-related protein, at 3,780,208 to 3,780,831
_3589
Position (kb)
3777
3778
3779
3780 Strain fitness (log2 ratio)
-1
0
1
2 at 3776.926 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.988 kb on + strand, within HP15_3586 at 3776.996 kb on - strand, within HP15_3586 at 3776.996 kb on - strand, within HP15_3586 at 3777.093 kb on + strand, within HP15_3586 at 3777.179 kb on - strand at 3777.284 kb on + strand at 3777.429 kb on + strand at 3777.435 kb on + strand at 3777.442 kb on - strand at 3777.453 kb on + strand at 3777.506 kb on - strand at 3777.508 kb on - strand at 3777.525 kb on - strand at 3777.607 kb on - strand at 3777.659 kb on - strand at 3777.679 kb on - strand at 3777.691 kb on + strand at 3777.848 kb on + strand at 3777.856 kb on - strand at 3777.896 kb on - strand at 3777.915 kb on + strand at 3777.920 kb on + strand at 3777.940 kb on + strand at 3777.971 kb on - strand at 3778.110 kb on + strand, within HP15_3587 at 3778.118 kb on - strand, within HP15_3587 at 3778.123 kb on + strand, within HP15_3587 at 3778.133 kb on + strand, within HP15_3587 at 3778.236 kb on + strand, within HP15_3587 at 3778.311 kb on + strand, within HP15_3587 at 3778.319 kb on - strand, within HP15_3587 at 3778.383 kb on + strand, within HP15_3587 at 3778.391 kb on + strand, within HP15_3587 at 3778.391 kb on + strand, within HP15_3587 at 3778.399 kb on - strand, within HP15_3587 at 3778.399 kb on - strand, within HP15_3587 at 3778.420 kb on - strand, within HP15_3587 at 3778.425 kb on - strand, within HP15_3587 at 3778.425 kb on - strand, within HP15_3587 at 3778.472 kb on + strand, within HP15_3587 at 3778.507 kb on + strand, within HP15_3587 at 3778.528 kb on + strand, within HP15_3587 at 3778.528 kb on + strand, within HP15_3587 at 3778.555 kb on + strand, within HP15_3587 at 3778.563 kb on - strand, within HP15_3587 at 3778.578 kb on + strand, within HP15_3587 at 3778.583 kb on + strand, within HP15_3587 at 3778.583 kb on + strand, within HP15_3587 at 3778.698 kb on + strand, within HP15_3587 at 3778.706 kb on - strand, within HP15_3587 at 3778.706 kb on - strand, within HP15_3587 at 3778.709 kb on + strand, within HP15_3587 at 3778.717 kb on - strand, within HP15_3587 at 3778.760 kb on - strand, within HP15_3587 at 3778.779 kb on + strand, within HP15_3587 at 3778.970 kb on - strand, within HP15_3587 at 3779.121 kb on + strand, within HP15_3587 at 3779.146 kb on + strand, within HP15_3587 at 3779.201 kb on + strand, within HP15_3587 at 3779.251 kb on + strand, within HP15_3587 at 3779.259 kb on - strand, within HP15_3587 at 3779.277 kb on - strand, within HP15_3587 at 3779.306 kb on - strand, within HP15_3587 at 3779.393 kb on + strand at 3779.412 kb on + strand at 3779.412 kb on + strand at 3779.412 kb on + strand at 3779.412 kb on + strand at 3779.420 kb on - strand at 3779.425 kb on + strand at 3779.511 kb on + strand at 3779.526 kb on - strand at 3779.582 kb on + strand at 3779.614 kb on - strand at 3779.637 kb on + strand at 3779.901 kb on + strand, within HP15_3588 at 3779.929 kb on + strand, within HP15_3588 at 3779.935 kb on - strand, within HP15_3588 at 3779.947 kb on - strand, within HP15_3588 at 3779.979 kb on + strand, within HP15_3588 at 3779.987 kb on - strand, within HP15_3588 at 3780.054 kb on + strand, within HP15_3588 at 3780.085 kb on - strand, within HP15_3588 at 3780.169 kb on + strand at 3780.213 kb on - strand at 3780.298 kb on + strand, within HP15_3589
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,776,926 + HP15_3586 0.69 -0.1 3,776,988 + HP15_3586 0.75 +0.6 3,776,988 + HP15_3586 0.75 +0.5 3,776,988 + HP15_3586 0.75 +0.0 3,776,996 - HP15_3586 0.76 +0.3 3,776,996 - HP15_3586 0.76 +0.5 3,777,093 + HP15_3586 0.86 -0.1 3,777,179 - +0.4 3,777,284 + +0.5 3,777,429 + +0.0 3,777,435 + +1.8 3,777,442 - +0.0 3,777,453 + -0.2 3,777,506 - -0.3 3,777,508 - +0.7 3,777,525 - -1.5 3,777,607 - -0.1 3,777,659 - +0.6 3,777,679 - +0.5 3,777,691 + +0.6 3,777,848 + -0.2 3,777,856 - +0.4 3,777,896 - -1.0 3,777,915 + +0.4 3,777,920 + -0.4 3,777,940 + +1.3 3,777,971 - +0.0 3,778,110 + HP15_3587 0.16 +0.4 3,778,118 - HP15_3587 0.17 +0.6 3,778,123 + HP15_3587 0.17 +0.1 3,778,133 + HP15_3587 0.18 -0.4 3,778,236 + HP15_3587 0.24 +0.3 3,778,311 + HP15_3587 0.29 -0.3 3,778,319 - HP15_3587 0.29 +0.6 3,778,383 + HP15_3587 0.33 +0.7 3,778,391 + HP15_3587 0.33 +0.3 3,778,391 + HP15_3587 0.33 +0.9 3,778,399 - HP15_3587 0.34 +1.6 3,778,399 - HP15_3587 0.34 +0.7 3,778,420 - HP15_3587 0.35 -0.5 3,778,425 - HP15_3587 0.35 +1.6 3,778,425 - HP15_3587 0.35 +0.6 3,778,472 + HP15_3587 0.38 +0.0 3,778,507 + HP15_3587 0.40 +0.2 3,778,528 + HP15_3587 0.42 +0.2 3,778,528 + HP15_3587 0.42 +0.0 3,778,555 + HP15_3587 0.43 +0.6 3,778,563 - HP15_3587 0.44 +0.4 3,778,578 + HP15_3587 0.45 -1.0 3,778,583 + HP15_3587 0.45 +0.0 3,778,583 + HP15_3587 0.45 -1.4 3,778,698 + HP15_3587 0.52 +0.2 3,778,706 - HP15_3587 0.53 +0.7 3,778,706 - HP15_3587 0.53 -0.5 3,778,709 + HP15_3587 0.53 -1.2 3,778,717 - HP15_3587 0.53 +0.0 3,778,760 - HP15_3587 0.56 +0.6 3,778,779 + HP15_3587 0.57 -0.5 3,778,970 - HP15_3587 0.69 -0.4 3,779,121 + HP15_3587 0.78 -0.1 3,779,146 + HP15_3587 0.79 +0.0 3,779,201 + HP15_3587 0.83 +0.5 3,779,251 + HP15_3587 0.86 -0.9 3,779,259 - HP15_3587 0.86 -0.6 3,779,277 - HP15_3587 0.87 -0.2 3,779,306 - HP15_3587 0.89 -0.6 3,779,393 + -0.0 3,779,412 + +0.7 3,779,412 + -0.5 3,779,412 + +0.0 3,779,412 + -0.3 3,779,420 - +0.1 3,779,425 + -0.4 3,779,511 + +0.3 3,779,526 - +0.1 3,779,582 + -1.0 3,779,614 - +0.6 3,779,637 + +0.6 3,779,901 + HP15_3588 0.52 -0.5 3,779,929 + HP15_3588 0.57 +0.0 3,779,935 - HP15_3588 0.58 -0.5 3,779,947 - HP15_3588 0.60 -0.5 3,779,979 + HP15_3588 0.66 +0.4 3,779,987 - HP15_3588 0.67 +0.2 3,780,054 + HP15_3588 0.79 +0.5 3,780,085 - HP15_3588 0.85 +0.5 3,780,169 + +0.4 3,780,213 - +0.4 3,780,298 + HP15_3589 0.14 +0.4
Or see this region's nucleotide sequence