Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01994

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01993 and CCNA_01994 overlap by 59 nucleotidesCCNA_01994 and CCNA_01995 overlap by 13 nucleotidesCCNA_01995 and CCNA_01996 overlap by 41 nucleotides CCNA_01993: CCNA_01993 - membrane endopeptidase MmpA, at 2,139,697 to 2,140,974 _01993 CCNA_01994: CCNA_01994 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,140,916 to 2,142,115 _01994 CCNA_01995: CCNA_01995 - phosphatidate cytidylyltransferase, at 2,142,103 to 2,142,948 _01995 CCNA_01996: CCNA_01996 - undecaprenyl pyrophosphate synthetase, at 2,142,908 to 2,143,687 _01996 Position (kb) 2140 2141 2142 2143Strain fitness (log2 ratio) -2 -1 0 1 2at 2139.946 kb on - strand, within CCNA_01993at 2139.946 kb on - strand, within CCNA_01993at 2140.014 kb on - strand, within CCNA_01993at 2140.017 kb on + strand, within CCNA_01993at 2140.032 kb on - strand, within CCNA_01993at 2140.032 kb on - strand, within CCNA_01993at 2140.032 kb on - strand, within CCNA_01993at 2140.033 kb on - strand, within CCNA_01993at 2140.061 kb on + strand, within CCNA_01993at 2140.061 kb on + strand, within CCNA_01993at 2140.069 kb on - strand, within CCNA_01993at 2140.069 kb on - strand, within CCNA_01993at 2140.069 kb on - strand, within CCNA_01993at 2140.069 kb on - strand, within CCNA_01993at 2140.114 kb on - strand, within CCNA_01993at 2140.114 kb on - strand, within CCNA_01993at 2140.192 kb on + strand, within CCNA_01993at 2140.192 kb on + strand, within CCNA_01993at 2140.192 kb on + strand, within CCNA_01993at 2140.200 kb on - strand, within CCNA_01993at 2140.220 kb on - strand, within CCNA_01993at 2140.275 kb on - strand, within CCNA_01993at 2140.275 kb on - strand, within CCNA_01993at 2140.337 kb on - strand, within CCNA_01993at 2140.344 kb on - strand, within CCNA_01993at 2140.363 kb on - strand, within CCNA_01993at 2140.406 kb on - strand, within CCNA_01993at 2140.503 kb on - strand, within CCNA_01993at 2140.560 kb on - strand, within CCNA_01993at 2140.801 kb on - strand, within CCNA_01993at 2140.801 kb on - strand, within CCNA_01993at 2140.808 kb on + strand, within CCNA_01993at 2140.808 kb on + strand, within CCNA_01993at 2140.808 kb on + strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.952 kb on - strandat 2142.113 kb on + strandat 2142.337 kb on - strand, within CCNA_01995at 2142.337 kb on - strand, within CCNA_01995at 2142.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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2,139,946 - CCNA_01993 0.19 +0.4
2,139,946 - CCNA_01993 0.19 +0.3
2,140,014 - CCNA_01993 0.25 -0.7
2,140,017 + CCNA_01993 0.25 +0.3
2,140,032 - CCNA_01993 0.26 +0.7
2,140,032 - CCNA_01993 0.26 +0.2
2,140,032 - CCNA_01993 0.26 +0.2
2,140,033 - CCNA_01993 0.26 +0.5
2,140,061 + CCNA_01993 0.28 +0.2
2,140,061 + CCNA_01993 0.28 -1.0
2,140,069 - CCNA_01993 0.29 +0.3
2,140,069 - CCNA_01993 0.29 +0.2
2,140,069 - CCNA_01993 0.29 +0.4
2,140,069 - CCNA_01993 0.29 +0.4
2,140,114 - CCNA_01993 0.33 +0.5
2,140,114 - CCNA_01993 0.33 +0.2
2,140,192 + CCNA_01993 0.39 -1.4
2,140,192 + CCNA_01993 0.39 +1.2
2,140,192 + CCNA_01993 0.39 -0.1
2,140,200 - CCNA_01993 0.39 -0.3
2,140,220 - CCNA_01993 0.41 +0.2
2,140,275 - CCNA_01993 0.45 +0.6
2,140,275 - CCNA_01993 0.45 +0.2
2,140,337 - CCNA_01993 0.50 -0.1
2,140,344 - CCNA_01993 0.51 +0.9
2,140,363 - CCNA_01993 0.52 +0.3
2,140,406 - CCNA_01993 0.55 +0.6
2,140,503 - CCNA_01993 0.63 -0.2
2,140,560 - CCNA_01993 0.68 -1.0
2,140,801 - CCNA_01993 0.86 -0.8
2,140,801 - CCNA_01993 0.86 +0.2
2,140,808 + CCNA_01993 0.87 -0.3
2,140,808 + CCNA_01993 0.87 +0.2
2,140,808 + CCNA_01993 0.87 -0.8
2,140,816 - CCNA_01993 0.88 -1.3
2,140,816 - CCNA_01993 0.88 +0.6
2,140,816 - CCNA_01993 0.88 +0.3
2,140,816 - CCNA_01993 0.88 +0.4
2,140,816 - CCNA_01993 0.88 +0.4
2,140,816 - CCNA_01993 0.88 +0.7
2,140,816 - CCNA_01993 0.88 -0.3
2,140,816 - CCNA_01993 0.88 +1.6
2,140,816 - CCNA_01993 0.88 +0.4
2,140,816 - CCNA_01993 0.88 +0.3
2,140,952 - +0.3
2,142,113 + +2.7
2,142,337 - CCNA_01995 0.28 -2.3
2,142,337 - CCNA_01995 0.28 -1.5
2,142,904 - +0.3

Or see this region's nucleotide sequence