Experiment: Varel_Bryant_medium_Glucose with 2-Mercaptopyridine N-oxide 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0343 and BT0344 are separated by 392 nucleotides BT0344 and BT0345 are separated by 52 nucleotides BT0345 and BT0346 are separated by 189 nucleotides
BT0343: BT0343 - methylcobamide:CoM methyltransferase mtbA (NCBI ptt file), at 411,895 to 412,911
BT0343
BT0344: BT0344 - hypothetical protein (NCBI ptt file), at 413,304 to 414,149
BT0344
BT0345: BT0345 - hypothetical protein (NCBI ptt file), at 414,202 to 414,912
BT0345
BT0346: BT0346 - ribose 5-phosphate isomerase B (NCBI ptt file), at 415,102 to 415,536
BT0346
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 412.315 kb on + strand, within BT0343 at 412.340 kb on - strand, within BT0343 at 412.562 kb on + strand, within BT0343 at 412.770 kb on - strand, within BT0343 at 412.867 kb on + strand at 412.938 kb on + strand at 412.939 kb on - strand at 412.953 kb on - strand at 412.953 kb on - strand at 412.998 kb on - strand at 412.998 kb on - strand at 413.039 kb on + strand at 413.058 kb on - strand at 413.106 kb on - strand at 413.160 kb on - strand at 413.344 kb on + strand at 413.395 kb on + strand, within BT0344 at 413.446 kb on + strand, within BT0344 at 413.483 kb on - strand, within BT0344 at 413.527 kb on + strand, within BT0344 at 413.603 kb on - strand, within BT0344 at 413.680 kb on - strand, within BT0344 at 413.680 kb on - strand, within BT0344 at 413.680 kb on - strand, within BT0344 at 413.736 kb on + strand, within BT0344 at 413.737 kb on - strand, within BT0344 at 413.739 kb on - strand, within BT0344 at 413.742 kb on - strand, within BT0344 at 413.742 kb on - strand, within BT0344 at 413.826 kb on + strand, within BT0344 at 413.834 kb on + strand, within BT0344 at 413.878 kb on + strand, within BT0344 at 413.882 kb on + strand, within BT0344 at 413.900 kb on + strand, within BT0344 at 413.901 kb on - strand, within BT0344 at 413.981 kb on + strand, within BT0344 at 414.009 kb on - strand, within BT0344 at 414.030 kb on - strand, within BT0344 at 414.041 kb on - strand, within BT0344 at 414.067 kb on + strand at 414.074 kb on - strand at 414.103 kb on + strand at 414.108 kb on - strand at 414.198 kb on + strand at 414.199 kb on - strand at 414.225 kb on - strand at 414.322 kb on + strand, within BT0345 at 414.354 kb on + strand, within BT0345 at 414.389 kb on - strand, within BT0345 at 414.459 kb on + strand, within BT0345 at 414.493 kb on - strand, within BT0345 at 414.502 kb on - strand, within BT0345 at 414.556 kb on + strand, within BT0345 at 414.559 kb on + strand, within BT0345 at 414.559 kb on + strand, within BT0345 at 414.615 kb on + strand, within BT0345 at 414.615 kb on + strand, within BT0345 at 414.615 kb on + strand, within BT0345 at 414.616 kb on - strand, within BT0345 at 414.645 kb on + strand, within BT0345 at 414.658 kb on - strand, within BT0345 at 414.668 kb on + strand, within BT0345 at 414.690 kb on + strand, within BT0345 at 414.690 kb on + strand, within BT0345 at 414.822 kb on - strand, within BT0345 at 414.837 kb on - strand, within BT0345 at 414.892 kb on + strand at 414.892 kb on + strand at 414.895 kb on + strand at 414.917 kb on - strand at 414.922 kb on + strand at 414.929 kb on - strand at 414.929 kb on - strand at 414.929 kb on - strand at 414.932 kb on + strand at 414.932 kb on + strand at 414.933 kb on - strand at 414.933 kb on - strand at 414.958 kb on - strand at 414.960 kb on - strand at 414.962 kb on + strand at 414.973 kb on - strand at 415.020 kb on + strand at 415.020 kb on + strand at 415.023 kb on - strand at 415.063 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with 2-Mercaptopyridine N-oxide 0.2 mM remove 412,315 + BT0343 0.41 -0.6 412,340 - BT0343 0.44 -0.6 412,562 + BT0343 0.66 -2.0 412,770 - BT0343 0.86 -1.5 412,867 + +1.0 412,938 + -0.0 412,939 - -1.8 412,953 - -0.8 412,953 - -0.0 412,998 - -1.4 412,998 - -3.6 413,039 + -1.6 413,058 - -1.0 413,106 - -1.0 413,160 - +1.0 413,344 + -1.6 413,395 + BT0344 0.11 -1.6 413,446 + BT0344 0.17 -1.6 413,483 - BT0344 0.21 -1.6 413,527 + BT0344 0.26 -2.8 413,603 - BT0344 0.35 -1.6 413,680 - BT0344 0.44 -1.3 413,680 - BT0344 0.44 -2.0 413,680 - BT0344 0.44 +1.0 413,736 + BT0344 0.51 -1.0 413,737 - BT0344 0.51 -1.0 413,739 - BT0344 0.51 -0.0 413,742 - BT0344 0.52 -1.0 413,742 - BT0344 0.52 -1.8 413,826 + BT0344 0.62 -0.0 413,834 + BT0344 0.63 +1.0 413,878 + BT0344 0.68 -2.3 413,882 + BT0344 0.68 +1.6 413,900 + BT0344 0.70 -1.9 413,901 - BT0344 0.71 -2.6 413,981 + BT0344 0.80 -2.3 414,009 - BT0344 0.83 -2.0 414,030 - BT0344 0.86 -0.3 414,041 - BT0344 0.87 -1.3 414,067 + -1.5 414,074 - -0.0 414,103 + -1.0 414,108 - -0.0 414,198 + -2.0 414,199 - -1.2 414,225 - +1.0 414,322 + BT0345 0.17 -1.4 414,354 + BT0345 0.21 -1.1 414,389 - BT0345 0.26 -0.0 414,459 + BT0345 0.36 -0.0 414,493 - BT0345 0.41 -1.0 414,502 - BT0345 0.42 +0.6 414,556 + BT0345 0.50 -0.6 414,559 + BT0345 0.50 -0.6 414,559 + BT0345 0.50 -2.4 414,615 + BT0345 0.58 -1.0 414,615 + BT0345 0.58 -2.6 414,615 + BT0345 0.58 -0.5 414,616 - BT0345 0.58 -1.6 414,645 + BT0345 0.62 +0.4 414,658 - BT0345 0.64 -0.4 414,668 + BT0345 0.66 -0.0 414,690 + BT0345 0.69 -1.5 414,690 + BT0345 0.69 -1.0 414,822 - BT0345 0.87 -1.6 414,837 - BT0345 0.89 -2.0 414,892 + -0.0 414,892 + -1.5 414,895 + -2.3 414,917 - -0.6 414,922 + -1.1 414,929 - -2.0 414,929 - -2.2 414,929 - -1.2 414,932 + -1.8 414,932 + +0.6 414,933 - -0.7 414,933 - -1.6 414,958 - -2.3 414,960 - +1.6 414,962 + -0.0 414,973 - -1.0 415,020 + -0.6 415,020 + -1.0 415,023 - -0.6 415,063 + +0.6
Or see this region's nucleotide sequence