Experiment: Formate/Acetate-Sulfite (60/5-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaC-1 and DVU0382 are separated by 81 nucleotides DVU0382 and DVU0383 are separated by 180 nucleotides DVU0383 and flr are separated by 358 nucleotides
DVU0381: nhaC-1 - Na+/H+ antiporter NhaC (TIGR), at 431,111 to 432,502
nhaC-1
DVU0382: DVU0382 - hypothetical protein (TIGR), at 432,584 to 432,883
DVU0382
DVU0383: DVU0383 - hypothetical protein (TIGR), at 433,064 to 433,453
DVU0383
DVU0384: flr - flavoredoxin (TIGR), at 433,812 to 434,384
flr
Position (kb) 433
434 Strain fitness (log2 ratio) -2
-1
0
1 at 432.083 kb on - strand, within nhaC-1 at 432.088 kb on - strand, within nhaC-1 at 432.096 kb on + strand, within nhaC-1 at 432.152 kb on - strand, within nhaC-1 at 432.183 kb on - strand, within nhaC-1 at 432.206 kb on - strand, within nhaC-1 at 432.305 kb on + strand, within nhaC-1 at 432.337 kb on + strand, within nhaC-1 at 432.340 kb on - strand, within nhaC-1 at 432.389 kb on - strand at 432.463 kb on - strand at 432.660 kb on + strand, within DVU0382 at 432.713 kb on + strand, within DVU0382 at 432.715 kb on + strand, within DVU0382 at 432.955 kb on - strand at 432.960 kb on + strand at 432.968 kb on - strand at 432.994 kb on - strand at 432.996 kb on - strand at 433.077 kb on + strand at 433.079 kb on + strand at 433.102 kb on + strand at 433.129 kb on - strand, within DVU0383 at 433.152 kb on - strand, within DVU0383 at 433.224 kb on - strand, within DVU0383 at 433.235 kb on + strand, within DVU0383 at 433.235 kb on + strand, within DVU0383 at 433.240 kb on + strand, within DVU0383 at 433.245 kb on + strand, within DVU0383 at 433.248 kb on - strand, within DVU0383 at 433.248 kb on - strand, within DVU0383 at 433.253 kb on - strand, within DVU0383 at 433.307 kb on + strand, within DVU0383 at 433.315 kb on - strand, within DVU0383 at 433.317 kb on + strand, within DVU0383 at 433.332 kb on + strand, within DVU0383 at 433.351 kb on - strand, within DVU0383 at 433.376 kb on - strand, within DVU0383 at 433.388 kb on - strand, within DVU0383 at 433.403 kb on - strand, within DVU0383 at 433.446 kb on + strand at 433.446 kb on + strand at 433.489 kb on + strand at 433.513 kb on - strand at 433.537 kb on + strand at 433.634 kb on - strand at 433.644 kb on + strand at 433.656 kb on - strand at 433.656 kb on - strand at 433.741 kb on + strand at 433.741 kb on + strand at 433.766 kb on - strand at 433.936 kb on + strand, within flr at 433.936 kb on - strand, within flr at 433.997 kb on - strand, within flr at 434.052 kb on + strand, within flr at 434.101 kb on + strand, within flr at 434.174 kb on + strand, within flr at 434.226 kb on + strand, within flr at 434.264 kb on - strand, within flr at 434.269 kb on - strand, within flr at 434.298 kb on - strand, within flr at 434.393 kb on + strand at 434.398 kb on + strand at 434.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/5-20 mM) remove 432,083 - nhaC-1 DVU0381 0.70 +0.2 432,088 - nhaC-1 DVU0381 0.70 -0.5 432,096 + nhaC-1 DVU0381 0.71 -0.1 432,152 - nhaC-1 DVU0381 0.75 +0.1 432,183 - nhaC-1 DVU0381 0.77 +0.5 432,206 - nhaC-1 DVU0381 0.79 +0.1 432,305 + nhaC-1 DVU0381 0.86 +0.9 432,337 + nhaC-1 DVU0381 0.88 -0.2 432,340 - nhaC-1 DVU0381 0.88 +0.3 432,389 - -0.0 432,463 - +0.2 432,660 + DVU0382 0.25 -0.0 432,713 + DVU0382 0.43 -0.1 432,715 + DVU0382 0.44 -0.4 432,955 - -0.1 432,960 + +0.1 432,968 - -0.3 432,994 - +0.2 432,996 - +0.1 433,077 + -0.3 433,079 + +1.1 433,102 + -0.2 433,129 - DVU0383 0.17 +0.4 433,152 - DVU0383 0.23 -0.3 433,224 - DVU0383 0.41 -0.4 433,235 + DVU0383 0.44 -0.2 433,235 + DVU0383 0.44 -0.1 433,240 + DVU0383 0.45 +0.2 433,245 + DVU0383 0.46 -0.9 433,248 - DVU0383 0.47 -1.7 433,248 - DVU0383 0.47 -1.4 433,253 - DVU0383 0.48 +0.1 433,307 + DVU0383 0.62 -0.3 433,315 - DVU0383 0.64 -1.1 433,317 + DVU0383 0.65 -2.7 433,332 + DVU0383 0.69 -0.2 433,351 - DVU0383 0.74 +0.0 433,376 - DVU0383 0.80 -0.9 433,388 - DVU0383 0.83 -0.5 433,403 - DVU0383 0.87 -0.9 433,446 + +0.1 433,446 + -0.1 433,489 + -0.1 433,513 - -1.4 433,537 + -0.1 433,634 - +0.0 433,644 + -1.1 433,656 - -0.1 433,656 - -0.0 433,741 + +0.1 433,741 + -0.2 433,766 - +0.1 433,936 + flr DVU0384 0.22 -1.9 433,936 - flr DVU0384 0.22 -0.4 433,997 - flr DVU0384 0.32 -0.2 434,052 + flr DVU0384 0.42 +0.4 434,101 + flr DVU0384 0.50 -1.4 434,174 + flr DVU0384 0.63 -0.1 434,226 + flr DVU0384 0.72 +0.2 434,264 - flr DVU0384 0.79 +0.2 434,269 - flr DVU0384 0.80 -1.1 434,298 - flr DVU0384 0.85 -0.5 434,393 + +1.3 434,398 + +0.1 434,401 - -0.0
Or see this region's nucleotide sequence