Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1366

Experiment: Formate/Acetate-Sulfite (60/5-20 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1365 and DVU1366 are separated by 160 nucleotidesDVU1366 and tatA are separated by 62 nucleotidestatA and DVU1368 are separated by 111 nucleotides DVU1365: DVU1365 - heme-binding protein, putative (TIGR), at 1,444,130 to 1,444,978 DVU1365 DVU1366: DVU1366 - lipoprotein, putative (TIGR), at 1,445,139 to 1,446,044 DVU1366 DVU1367: tatA - twin-arginine translocation protein, TatA/E family (TIGR), at 1,446,107 to 1,446,304 tatA DVU1368: DVU1368 - rhodanese-like domain protein (TIGR), at 1,446,416 to 1,448,038 DVU1368 Position (kb) 1445 1446 1447Strain fitness (log2 ratio) -1 0 1at 1444.147 kb on + strandat 1444.161 kb on - strandat 1444.964 kb on + strandat 1444.966 kb on - strandat 1445.183 kb on - strandat 1445.186 kb on + strandat 1445.217 kb on - strandat 1445.273 kb on - strand, within DVU1366at 1445.319 kb on - strand, within DVU1366at 1445.332 kb on + strand, within DVU1366at 1445.426 kb on + strand, within DVU1366at 1445.426 kb on + strand, within DVU1366at 1445.438 kb on + strand, within DVU1366at 1445.438 kb on + strand, within DVU1366at 1445.438 kb on + strand, within DVU1366at 1445.446 kb on - strand, within DVU1366at 1445.446 kb on - strand, within DVU1366at 1445.554 kb on + strand, within DVU1366at 1445.556 kb on + strand, within DVU1366at 1445.637 kb on - strand, within DVU1366at 1445.640 kb on + strand, within DVU1366at 1445.822 kb on + strand, within DVU1366at 1445.842 kb on - strand, within DVU1366at 1445.847 kb on - strand, within DVU1366at 1445.848 kb on + strand, within DVU1366at 1445.897 kb on - strand, within DVU1366at 1445.899 kb on + strand, within DVU1366at 1445.907 kb on - strand, within DVU1366at 1445.912 kb on - strand, within DVU1366at 1445.955 kb on + strandat 1445.979 kb on - strandat 1445.991 kb on - strandat 1446.343 kb on - strandat 1446.343 kb on - strandat 1446.343 kb on - strandat 1446.343 kb on - strandat 1446.361 kb on - strandat 1446.381 kb on - strandat 1446.554 kb on + strandat 1446.588 kb on + strand, within DVU1368at 1446.618 kb on + strand, within DVU1368at 1446.618 kb on + strand, within DVU1368at 1446.626 kb on - strand, within DVU1368at 1446.725 kb on + strand, within DVU1368at 1446.745 kb on + strand, within DVU1368at 1446.752 kb on + strand, within DVU1368at 1446.760 kb on - strand, within DVU1368at 1446.764 kb on + strand, within DVU1368at 1446.796 kb on - strand, within DVU1368at 1446.967 kb on + strand, within DVU1368at 1447.007 kb on - strand, within DVU1368

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/5-20 mM)
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1,444,147 + +0.6
1,444,161 - -0.9
1,444,964 + -1.0
1,444,966 - -0.1
1,445,183 - -0.2
1,445,186 + -0.5
1,445,217 - -0.7
1,445,273 - DVU1366 0.15 -0.2
1,445,319 - DVU1366 0.20 -0.2
1,445,332 + DVU1366 0.21 -0.3
1,445,426 + DVU1366 0.32 -0.3
1,445,426 + DVU1366 0.32 -0.2
1,445,438 + DVU1366 0.33 -0.0
1,445,438 + DVU1366 0.33 -0.2
1,445,438 + DVU1366 0.33 +0.1
1,445,446 - DVU1366 0.34 -1.1
1,445,446 - DVU1366 0.34 -0.0
1,445,554 + DVU1366 0.46 -0.4
1,445,556 + DVU1366 0.46 -0.3
1,445,637 - DVU1366 0.55 +0.3
1,445,640 + DVU1366 0.55 +0.8
1,445,822 + DVU1366 0.75 -0.2
1,445,842 - DVU1366 0.78 +0.6
1,445,847 - DVU1366 0.78 +1.3
1,445,848 + DVU1366 0.78 -0.6
1,445,897 - DVU1366 0.84 +0.6
1,445,899 + DVU1366 0.84 +0.1
1,445,907 - DVU1366 0.85 +0.4
1,445,912 - DVU1366 0.85 -0.9
1,445,955 + -0.4
1,445,979 - -0.7
1,445,991 - -0.4
1,446,343 - +1.2
1,446,343 - +1.2
1,446,343 - +0.9
1,446,343 - +0.5
1,446,361 - +0.0
1,446,381 - +0.0
1,446,554 + -0.7
1,446,588 + DVU1368 0.11 -0.2
1,446,618 + DVU1368 0.12 -0.2
1,446,618 + DVU1368 0.12 +0.6
1,446,626 - DVU1368 0.13 +0.6
1,446,725 + DVU1368 0.19 -0.2
1,446,745 + DVU1368 0.20 -0.4
1,446,752 + DVU1368 0.21 -1.3
1,446,760 - DVU1368 0.21 -0.3
1,446,764 + DVU1368 0.21 +0.9
1,446,796 - DVU1368 0.23 -1.2
1,446,967 + DVU1368 0.34 -0.4
1,447,007 - DVU1368 0.36 -1.3

Or see this region's nucleotide sequence