Experiment: Formate/Acetate-Sulfite (60/5-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0790 and ogt are separated by 74 nucleotides ogt and DVU0792 overlap by 7 nucleotides DVU0792 and tRNA-Ser are separated by 273 nucleotides tRNA-Ser and DVU0793 are separated by 149 nucleotides DVU0793 and fabI are separated by 2 nucleotides
DVU0790: DVU0790 - radical SAM protein, TIGR01212 family (TIGR), at 876,761 to 877,816
DVU0790
DVU0791: ogt - methylated-DNA--protein-cysteine methyltransferase, DNA-binding domain protein (TIGR), at 877,891 to 878,376
ogt
DVU0792: DVU0792 - conserved domain protein (TIGR), at 878,370 to 878,702
DVU0792
DVU_tRNA-Ser-2: tRNA-Ser - tRNA with anticodon GGA for Ser (VIMSS-AUTO), at 878,976 to 879,067
tRNA-Ser
DVU0793: DVU0793 - hypothetical protein (TIGR), at 879,217 to 879,312
DVU0793
DVU0794: fabI - enoyl-(acyl-carrier-protein) reductase (TIGR), at 879,315 to 880,079
fabI
Position (kb) 878
879 Strain fitness (log2 ratio) -1
0
1
2 at 877.371 kb on - strand, within DVU0790 at 877.449 kb on - strand, within DVU0790 at 877.459 kb on + strand, within DVU0790 at 877.459 kb on - strand, within DVU0790 at 877.497 kb on + strand, within DVU0790 at 877.783 kb on + strand at 877.803 kb on + strand at 877.803 kb on + strand at 877.803 kb on + strand at 877.822 kb on - strand at 877.824 kb on + strand at 877.927 kb on + strand at 877.961 kb on - strand, within ogt at 877.963 kb on + strand, within ogt at 877.963 kb on + strand, within ogt at 878.031 kb on - strand, within ogt at 878.033 kb on + strand, within ogt at 878.038 kb on - strand, within ogt at 878.086 kb on + strand, within ogt at 878.104 kb on - strand, within ogt at 878.127 kb on - strand, within ogt at 878.238 kb on + strand, within ogt at 878.250 kb on + strand, within ogt at 878.250 kb on + strand, within ogt at 878.258 kb on - strand, within ogt at 878.261 kb on + strand, within ogt at 878.346 kb on + strand at 878.381 kb on + strand at 878.437 kb on + strand, within DVU0792 at 878.437 kb on + strand, within DVU0792 at 878.437 kb on + strand, within DVU0792 at 878.445 kb on - strand, within DVU0792 at 878.445 kb on - strand, within DVU0792 at 878.445 kb on - strand, within DVU0792 at 878.498 kb on + strand, within DVU0792 at 878.511 kb on + strand, within DVU0792 at 878.546 kb on - strand, within DVU0792 at 878.555 kb on + strand, within DVU0792 at 878.555 kb on + strand, within DVU0792 at 878.613 kb on - strand, within DVU0792 at 878.623 kb on + strand, within DVU0792 at 878.623 kb on + strand, within DVU0792 at 878.628 kb on + strand, within DVU0792 at 878.628 kb on + strand, within DVU0792 at 878.633 kb on + strand, within DVU0792 at 878.636 kb on - strand, within DVU0792 at 878.682 kb on - strand at 878.684 kb on + strand at 878.689 kb on + strand at 878.707 kb on - strand at 878.721 kb on + strand at 878.729 kb on - strand at 878.729 kb on - strand at 878.792 kb on + strand at 879.216 kb on - strand at 879.298 kb on + strand, within DVU0793 at 879.635 kb on + strand, within fabI
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/5-20 mM) remove 877,371 - DVU0790 0.58 -0.2 877,449 - DVU0790 0.65 -0.3 877,459 + DVU0790 0.66 +2.1 877,459 - DVU0790 0.66 -0.9 877,497 + DVU0790 0.70 -0.4 877,783 + +0.6 877,803 + -0.0 877,803 + -0.0 877,803 + +0.0 877,822 - +0.0 877,824 + -0.0 877,927 + -0.2 877,961 - ogt DVU0791 0.14 -0.2 877,963 + ogt DVU0791 0.15 -0.2 877,963 + ogt DVU0791 0.15 -0.1 878,031 - ogt DVU0791 0.29 +0.0 878,033 + ogt DVU0791 0.29 -0.3 878,038 - ogt DVU0791 0.30 -0.0 878,086 + ogt DVU0791 0.40 -0.2 878,104 - ogt DVU0791 0.44 -0.5 878,127 - ogt DVU0791 0.49 +0.2 878,238 + ogt DVU0791 0.71 +0.4 878,250 + ogt DVU0791 0.74 +0.2 878,250 + ogt DVU0791 0.74 -1.0 878,258 - ogt DVU0791 0.76 -1.3 878,261 + ogt DVU0791 0.76 +0.1 878,346 + +1.6 878,381 + -1.1 878,437 + DVU0792 0.20 +0.5 878,437 + DVU0792 0.20 -0.8 878,437 + DVU0792 0.20 -0.8 878,445 - DVU0792 0.23 -0.2 878,445 - DVU0792 0.23 +1.1 878,445 - DVU0792 0.23 +0.1 878,498 + DVU0792 0.38 +1.6 878,511 + DVU0792 0.42 +0.3 878,546 - DVU0792 0.53 -0.1 878,555 + DVU0792 0.56 -0.4 878,555 + DVU0792 0.56 +0.4 878,613 - DVU0792 0.73 +2.1 878,623 + DVU0792 0.76 +0.1 878,623 + DVU0792 0.76 +0.2 878,628 + DVU0792 0.77 -0.3 878,628 + DVU0792 0.77 -0.2 878,633 + DVU0792 0.79 +0.5 878,636 - DVU0792 0.80 +1.1 878,682 - -0.4 878,684 + +0.2 878,689 + -0.6 878,707 - +0.6 878,721 + -0.6 878,729 - +0.3 878,729 - -1.3 878,792 + -0.3 879,216 - -0.2 879,298 + DVU0793 0.84 +0.6 879,635 + fabI DVU0794 0.42 -0.3
Or see this region's nucleotide sequence