Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6086 and Pf6N2E2_6087 are separated by 202 nucleotides Pf6N2E2_6087 and Pf6N2E2_6088 are separated by 29 nucleotides Pf6N2E2_6088 and Pf6N2E2_6089 are separated by 72 nucleotides
Pf6N2E2_6086 - Transcriptional regulator, AraC family, at 6,910,971 to 6,911,918
_6086
Pf6N2E2_6087 - Short-chain dehydrogenase/reductase SDR, at 6,912,121 to 6,912,858
_6087
Pf6N2E2_6088 - hypothetical protein, at 6,912,888 to 6,913,145
_6088
Pf6N2E2_6089 - ThiJ/PfpI family protein, at 6,913,218 to 6,913,904
_6089
Position (kb)
6912
6913 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6911.273 kb on - strand, within Pf6N2E2_6086 at 6911.335 kb on - strand, within Pf6N2E2_6086 at 6911.594 kb on - strand, within Pf6N2E2_6086 at 6911.660 kb on - strand, within Pf6N2E2_6086 at 6911.674 kb on + strand, within Pf6N2E2_6086 at 6911.675 kb on - strand, within Pf6N2E2_6086 at 6911.675 kb on - strand, within Pf6N2E2_6086 at 6911.675 kb on - strand, within Pf6N2E2_6086 at 6911.675 kb on - strand, within Pf6N2E2_6086 at 6911.680 kb on + strand, within Pf6N2E2_6086 at 6911.680 kb on + strand, within Pf6N2E2_6086 at 6911.680 kb on + strand, within Pf6N2E2_6086 at 6911.680 kb on + strand, within Pf6N2E2_6086 at 6911.680 kb on + strand, within Pf6N2E2_6086 at 6911.680 kb on + strand, within Pf6N2E2_6086 at 6911.680 kb on + strand, within Pf6N2E2_6086 at 6911.681 kb on - strand, within Pf6N2E2_6086 at 6911.730 kb on + strand, within Pf6N2E2_6086 at 6911.730 kb on + strand, within Pf6N2E2_6086 at 6911.808 kb on - strand, within Pf6N2E2_6086 at 6911.821 kb on + strand, within Pf6N2E2_6086 at 6911.822 kb on - strand, within Pf6N2E2_6086 at 6911.958 kb on - strand at 6911.960 kb on + strand at 6911.998 kb on - strand at 6912.583 kb on + strand, within Pf6N2E2_6087 at 6912.583 kb on + strand, within Pf6N2E2_6087 at 6912.584 kb on - strand, within Pf6N2E2_6087 at 6912.584 kb on - strand, within Pf6N2E2_6087 at 6912.787 kb on + strand at 6912.788 kb on - strand at 6912.812 kb on + strand at 6912.813 kb on - strand at 6912.928 kb on + strand, within Pf6N2E2_6088 at 6913.000 kb on + strand, within Pf6N2E2_6088 at 6913.000 kb on + strand, within Pf6N2E2_6088 at 6913.000 kb on + strand, within Pf6N2E2_6088 at 6913.001 kb on - strand, within Pf6N2E2_6088 at 6913.001 kb on - strand, within Pf6N2E2_6088 at 6913.001 kb on - strand, within Pf6N2E2_6088 at 6913.014 kb on + strand, within Pf6N2E2_6088 at 6913.015 kb on - strand, within Pf6N2E2_6088 at 6913.015 kb on - strand, within Pf6N2E2_6088 at 6913.027 kb on - strand, within Pf6N2E2_6088 at 6913.054 kb on - strand, within Pf6N2E2_6088 at 6913.364 kb on - strand, within Pf6N2E2_6089 at 6913.534 kb on + strand, within Pf6N2E2_6089 at 6913.535 kb on - strand, within Pf6N2E2_6089 at 6913.618 kb on + strand, within Pf6N2E2_6089 at 6913.618 kb on + strand, within Pf6N2E2_6089 at 6913.619 kb on - strand, within Pf6N2E2_6089 at 6913.619 kb on - strand, within Pf6N2E2_6089 at 6913.619 kb on - strand, within Pf6N2E2_6089 at 6913.833 kb on + strand, within Pf6N2E2_6089 at 6913.834 kb on - strand, within Pf6N2E2_6089 at 6913.840 kb on + strand at 6913.841 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 6,911,273 - Pf6N2E2_6086 0.32 +1.0 6,911,335 - Pf6N2E2_6086 0.38 -0.0 6,911,594 - Pf6N2E2_6086 0.66 -0.7 6,911,660 - Pf6N2E2_6086 0.73 -0.2 6,911,674 + Pf6N2E2_6086 0.74 -0.4 6,911,675 - Pf6N2E2_6086 0.74 +0.9 6,911,675 - Pf6N2E2_6086 0.74 +0.6 6,911,675 - Pf6N2E2_6086 0.74 -1.4 6,911,675 - Pf6N2E2_6086 0.74 +0.0 6,911,680 + Pf6N2E2_6086 0.75 -2.8 6,911,680 + Pf6N2E2_6086 0.75 +1.8 6,911,680 + Pf6N2E2_6086 0.75 -0.6 6,911,680 + Pf6N2E2_6086 0.75 +0.8 6,911,680 + Pf6N2E2_6086 0.75 -0.2 6,911,680 + Pf6N2E2_6086 0.75 +0.2 6,911,680 + Pf6N2E2_6086 0.75 +0.8 6,911,681 - Pf6N2E2_6086 0.75 +0.2 6,911,730 + Pf6N2E2_6086 0.80 -2.6 6,911,730 + Pf6N2E2_6086 0.80 +0.6 6,911,808 - Pf6N2E2_6086 0.88 +0.3 6,911,821 + Pf6N2E2_6086 0.90 +0.3 6,911,822 - Pf6N2E2_6086 0.90 +0.0 6,911,958 - -1.1 6,911,960 + +1.1 6,911,998 - -1.3 6,912,583 + Pf6N2E2_6087 0.63 +0.5 6,912,583 + Pf6N2E2_6087 0.63 +0.6 6,912,584 - Pf6N2E2_6087 0.63 +1.3 6,912,584 - Pf6N2E2_6087 0.63 +1.0 6,912,787 + -2.2 6,912,788 - +0.3 6,912,812 + -0.4 6,912,813 - -0.9 6,912,928 + Pf6N2E2_6088 0.16 -0.0 6,913,000 + Pf6N2E2_6088 0.43 +0.5 6,913,000 + Pf6N2E2_6088 0.43 -0.5 6,913,000 + Pf6N2E2_6088 0.43 +0.4 6,913,001 - Pf6N2E2_6088 0.44 -2.1 6,913,001 - Pf6N2E2_6088 0.44 -0.5 6,913,001 - Pf6N2E2_6088 0.44 -1.5 6,913,014 + Pf6N2E2_6088 0.49 +1.5 6,913,015 - Pf6N2E2_6088 0.49 +1.9 6,913,015 - Pf6N2E2_6088 0.49 +1.3 6,913,027 - Pf6N2E2_6088 0.54 -1.4 6,913,054 - Pf6N2E2_6088 0.64 +0.3 6,913,364 - Pf6N2E2_6089 0.21 -0.2 6,913,534 + Pf6N2E2_6089 0.46 +0.2 6,913,535 - Pf6N2E2_6089 0.46 -0.6 6,913,618 + Pf6N2E2_6089 0.58 -0.6 6,913,618 + Pf6N2E2_6089 0.58 -0.4 6,913,619 - Pf6N2E2_6089 0.58 +0.9 6,913,619 - Pf6N2E2_6089 0.58 +0.8 6,913,619 - Pf6N2E2_6089 0.58 -0.2 6,913,833 + Pf6N2E2_6089 0.90 +0.6 6,913,834 - Pf6N2E2_6089 0.90 -0.4 6,913,840 + -0.4 6,913,841 - -0.0
Or see this region's nucleotide sequence