Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_569 and Pf6N2E2_570 are separated by 127 nucleotides Pf6N2E2_570 and Pf6N2E2_571 are separated by 23 nucleotides Pf6N2E2_571 and Pf6N2E2_572 are separated by 184 nucleotides Pf6N2E2_572 and Pf6N2E2_573 are separated by 67 nucleotides
Pf6N2E2_569 - FIG00793915: hypothetical protein, at 644,069 to 644,557
_569
Pf6N2E2_570 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 644,685 to 645,302
_570
Pf6N2E2_571 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 645,326 to 646,369
_571
Pf6N2E2_572 - hypothetical protein, at 646,554 to 647,033
_572
Pf6N2E2_573 - Potassium uptake protein TrkH, at 647,101 to 648,555
_573
Position (kb) 645
646
647 Strain fitness (log2 ratio) -1
0
1 at 644.581 kb on - strand at 644.581 kb on - strand at 644.711 kb on - strand at 644.711 kb on - strand at 644.864 kb on - strand, within Pf6N2E2_570 at 644.864 kb on - strand, within Pf6N2E2_570 at 644.871 kb on + strand, within Pf6N2E2_570 at 645.157 kb on + strand, within Pf6N2E2_570 at 645.158 kb on - strand, within Pf6N2E2_570 at 645.307 kb on + strand at 645.308 kb on - strand at 645.374 kb on + strand at 645.721 kb on - strand, within Pf6N2E2_571 at 645.725 kb on + strand, within Pf6N2E2_571 at 645.726 kb on - strand, within Pf6N2E2_571 at 645.726 kb on - strand, within Pf6N2E2_571 at 645.726 kb on - strand, within Pf6N2E2_571 at 645.726 kb on - strand, within Pf6N2E2_571 at 645.726 kb on - strand, within Pf6N2E2_571 at 646.015 kb on - strand, within Pf6N2E2_571 at 646.015 kb on - strand, within Pf6N2E2_571 at 646.015 kb on - strand, within Pf6N2E2_571 at 646.298 kb on - strand at 646.400 kb on + strand at 646.400 kb on + strand at 646.420 kb on + strand at 646.420 kb on + strand at 646.420 kb on + strand at 646.420 kb on + strand at 646.421 kb on - strand at 646.421 kb on - strand at 646.517 kb on - strand at 646.565 kb on + strand at 646.565 kb on + strand at 646.566 kb on - strand at 646.656 kb on + strand, within Pf6N2E2_572 at 646.656 kb on + strand, within Pf6N2E2_572 at 646.926 kb on - strand, within Pf6N2E2_572 at 646.973 kb on + strand, within Pf6N2E2_572 at 647.106 kb on - strand at 647.174 kb on - strand at 647.347 kb on - strand, within Pf6N2E2_573 at 647.347 kb on - strand, within Pf6N2E2_573
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 644,581 - +0.5 644,581 - -0.2 644,711 - -0.3 644,711 - +0.4 644,864 - Pf6N2E2_570 0.29 +0.1 644,864 - Pf6N2E2_570 0.29 +0.3 644,871 + Pf6N2E2_570 0.30 -0.0 645,157 + Pf6N2E2_570 0.76 -0.6 645,158 - Pf6N2E2_570 0.77 +0.6 645,307 + +1.3 645,308 - -1.4 645,374 + -0.1 645,721 - Pf6N2E2_571 0.38 +0.8 645,725 + Pf6N2E2_571 0.38 +1.0 645,726 - Pf6N2E2_571 0.38 +1.4 645,726 - Pf6N2E2_571 0.38 +0.4 645,726 - Pf6N2E2_571 0.38 -0.3 645,726 - Pf6N2E2_571 0.38 +1.1 645,726 - Pf6N2E2_571 0.38 +1.7 646,015 - Pf6N2E2_571 0.66 +0.3 646,015 - Pf6N2E2_571 0.66 +0.5 646,015 - Pf6N2E2_571 0.66 +0.9 646,298 - -0.9 646,400 + +0.4 646,400 + +0.1 646,420 + +0.7 646,420 + -1.1 646,420 + +0.5 646,420 + -0.2 646,421 - +0.9 646,421 - -0.1 646,517 - -0.8 646,565 + +0.6 646,565 + -0.7 646,566 - +0.9 646,656 + Pf6N2E2_572 0.21 -0.1 646,656 + Pf6N2E2_572 0.21 +0.2 646,926 - Pf6N2E2_572 0.78 -0.4 646,973 + Pf6N2E2_572 0.87 +0.7 647,106 - +0.5 647,174 - -0.8 647,347 - Pf6N2E2_573 0.17 +0.3 647,347 - Pf6N2E2_573 0.17 +0.4
Or see this region's nucleotide sequence