Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5241 and Pf6N2E2_5242 are separated by 707 nucleotides Pf6N2E2_5242 and Pf6N2E2_5243 overlap by 9 nucleotides Pf6N2E2_5243 and Pf6N2E2_5244 are separated by 558 nucleotides
Pf6N2E2_5241 - Aminopeptidase N, at 6,037,886 to 6,038,173
_5241
Pf6N2E2_5242 - Malate:quinone oxidoreductase (EC 1.1.5.4), at 6,038,881 to 6,040,386
_5242
Pf6N2E2_5243 - hypothetical protein, at 6,040,378 to 6,040,566
_5243
Pf6N2E2_5244 - FIG00954931: hypothetical protein, at 6,041,125 to 6,041,358
_5244
Position (kb)
6038
6039
6040
6041 Strain fitness (log2 ratio)
-2
-1
0
1 at 6038.141 kb on + strand, within Pf6N2E2_5241 at 6038.141 kb on + strand, within Pf6N2E2_5241 at 6038.225 kb on + strand at 6038.225 kb on + strand at 6038.226 kb on - strand at 6038.237 kb on + strand at 6038.237 kb on + strand at 6038.246 kb on - strand at 6038.260 kb on - strand at 6038.352 kb on + strand at 6038.375 kb on - strand at 6038.550 kb on + strand at 6038.574 kb on + strand at 6038.575 kb on - strand at 6038.579 kb on + strand at 6038.579 kb on + strand at 6038.579 kb on + strand at 6038.579 kb on + strand at 6038.579 kb on + strand at 6038.580 kb on - strand at 6038.580 kb on - strand at 6038.580 kb on - strand at 6038.580 kb on - strand at 6038.580 kb on - strand at 6038.580 kb on - strand at 6038.580 kb on - strand at 6038.582 kb on + strand at 6038.582 kb on + strand at 6038.582 kb on + strand at 6038.582 kb on + strand at 6038.582 kb on + strand at 6038.617 kb on + strand at 6038.617 kb on + strand at 6038.618 kb on - strand at 6038.618 kb on - strand at 6038.618 kb on - strand at 6038.618 kb on - strand at 6038.622 kb on - strand at 6038.622 kb on - strand at 6038.622 kb on - strand at 6038.751 kb on + strand at 6038.752 kb on - strand at 6038.754 kb on + strand at 6038.778 kb on - strand at 6038.835 kb on - strand at 6038.872 kb on + strand at 6039.777 kb on - strand, within Pf6N2E2_5242 at 6039.950 kb on + strand, within Pf6N2E2_5242 at 6039.951 kb on - strand, within Pf6N2E2_5242 at 6039.951 kb on - strand, within Pf6N2E2_5242 at 6040.101 kb on - strand, within Pf6N2E2_5242 at 6040.101 kb on - strand, within Pf6N2E2_5242 at 6040.361 kb on - strand at 6040.428 kb on - strand, within Pf6N2E2_5243 at 6040.469 kb on - strand, within Pf6N2E2_5243 at 6040.564 kb on + strand at 6040.590 kb on - strand at 6040.694 kb on + strand at 6040.850 kb on - strand at 6040.850 kb on - strand at 6040.850 kb on - strand at 6040.892 kb on - strand at 6041.006 kb on - strand at 6041.051 kb on + strand at 6041.051 kb on + strand at 6041.051 kb on + strand at 6041.052 kb on - strand at 6041.052 kb on - strand at 6041.052 kb on - strand at 6041.053 kb on + strand at 6041.054 kb on - strand at 6041.054 kb on - strand at 6041.101 kb on + strand at 6041.346 kb on + strand at 6041.346 kb on + strand at 6041.346 kb on + strand at 6041.346 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 6,038,141 + Pf6N2E2_5241 0.89 +0.7 6,038,141 + Pf6N2E2_5241 0.89 -0.4 6,038,225 + +0.4 6,038,225 + -2.4 6,038,226 - -1.8 6,038,237 + +0.2 6,038,237 + -0.2 6,038,246 - -0.7 6,038,260 - -0.6 6,038,352 + +0.3 6,038,375 - -1.8 6,038,550 + +0.8 6,038,574 + +1.4 6,038,575 - +0.9 6,038,579 + -0.7 6,038,579 + -0.4 6,038,579 + -0.2 6,038,579 + +0.4 6,038,579 + +0.1 6,038,580 - -0.1 6,038,580 - +0.7 6,038,580 - -0.1 6,038,580 - +0.9 6,038,580 - +0.3 6,038,580 - +0.1 6,038,580 - -0.3 6,038,582 + -0.0 6,038,582 + -0.8 6,038,582 + -0.3 6,038,582 + +0.6 6,038,582 + +0.2 6,038,617 + +0.4 6,038,617 + -0.1 6,038,618 - +1.2 6,038,618 - -0.1 6,038,618 - +0.4 6,038,618 - +0.0 6,038,622 - -0.3 6,038,622 - -0.1 6,038,622 - -0.0 6,038,751 + +0.4 6,038,752 - +0.5 6,038,754 + -0.5 6,038,778 - +0.0 6,038,835 - -0.8 6,038,872 + -0.9 6,039,777 - Pf6N2E2_5242 0.59 -2.0 6,039,950 + Pf6N2E2_5242 0.71 +0.4 6,039,951 - Pf6N2E2_5242 0.71 -0.7 6,039,951 - Pf6N2E2_5242 0.71 +0.4 6,040,101 - Pf6N2E2_5242 0.81 -0.6 6,040,101 - Pf6N2E2_5242 0.81 -0.6 6,040,361 - +0.4 6,040,428 - Pf6N2E2_5243 0.26 -0.4 6,040,469 - Pf6N2E2_5243 0.48 -1.5 6,040,564 + -1.1 6,040,590 - -1.4 6,040,694 + -1.4 6,040,850 - +0.3 6,040,850 - -0.2 6,040,850 - -2.0 6,040,892 - +0.4 6,041,006 - +0.2 6,041,051 + -1.5 6,041,051 + -1.7 6,041,051 + -1.1 6,041,052 - +1.7 6,041,052 - +0.2 6,041,052 - +0.4 6,041,053 + -1.0 6,041,054 - -0.1 6,041,054 - -0.9 6,041,101 + -0.3 6,041,346 + +0.3 6,041,346 + -0.7 6,041,346 + +0.6 6,041,346 + +0.3
Or see this region's nucleotide sequence