Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5085 and Pf6N2E2_5086 are separated by 401 nucleotides Pf6N2E2_5086 and Pf6N2E2_5087 are separated by 230 nucleotides Pf6N2E2_5087 and Pf6N2E2_5088 are separated by 70 nucleotides
Pf6N2E2_5085 - Lanthionine biosynthesis protein LanM, at 5,866,264 to 5,869,347
_5085
Pf6N2E2_5086 - hypothetical protein, at 5,869,749 to 5,869,892
_5086
Pf6N2E2_5087 - Transcription elongation factor GreB-related protein, at 5,870,123 to 5,870,614
_5087
Pf6N2E2_5088 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,870,685 to 5,871,041
_5088
Position (kb)
5869
5870 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5868.827 kb on - strand, within Pf6N2E2_5085 at 5868.827 kb on - strand, within Pf6N2E2_5085 at 5868.879 kb on + strand, within Pf6N2E2_5085 at 5868.887 kb on + strand, within Pf6N2E2_5085 at 5868.887 kb on + strand, within Pf6N2E2_5085 at 5868.887 kb on + strand, within Pf6N2E2_5085 at 5868.888 kb on - strand, within Pf6N2E2_5085 at 5868.935 kb on + strand, within Pf6N2E2_5085 at 5868.935 kb on + strand, within Pf6N2E2_5085 at 5868.935 kb on + strand, within Pf6N2E2_5085 at 5868.936 kb on - strand, within Pf6N2E2_5085 at 5869.025 kb on + strand, within Pf6N2E2_5085 at 5869.068 kb on + strand at 5869.068 kb on + strand at 5869.131 kb on + strand at 5869.188 kb on + strand at 5869.189 kb on - strand at 5869.190 kb on + strand at 5869.190 kb on + strand at 5869.190 kb on + strand at 5869.191 kb on - strand at 5869.301 kb on + strand at 5869.308 kb on - strand at 5869.353 kb on - strand at 5869.389 kb on + strand at 5869.398 kb on - strand at 5869.398 kb on - strand at 5869.398 kb on - strand at 5869.433 kb on + strand at 5869.459 kb on - strand at 5869.669 kb on + strand at 5869.670 kb on - strand at 5869.709 kb on + strand at 5869.876 kb on - strand, within Pf6N2E2_5086 at 5869.992 kb on - strand at 5870.012 kb on - strand at 5870.038 kb on - strand at 5870.096 kb on - strand at 5870.096 kb on - strand at 5870.529 kb on + strand, within Pf6N2E2_5087 at 5870.529 kb on + strand, within Pf6N2E2_5087 at 5870.529 kb on + strand, within Pf6N2E2_5087 at 5870.529 kb on + strand, within Pf6N2E2_5087 at 5870.530 kb on - strand, within Pf6N2E2_5087 at 5870.530 kb on - strand, within Pf6N2E2_5087 at 5870.530 kb on - strand, within Pf6N2E2_5087 at 5870.628 kb on - strand at 5870.686 kb on + strand at 5870.687 kb on - strand at 5870.857 kb on + strand, within Pf6N2E2_5088 at 5870.858 kb on - strand, within Pf6N2E2_5088
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 5,868,827 - Pf6N2E2_5085 0.83 -3.0 5,868,827 - Pf6N2E2_5085 0.83 -0.8 5,868,879 + Pf6N2E2_5085 0.85 +1.1 5,868,887 + Pf6N2E2_5085 0.85 +0.1 5,868,887 + Pf6N2E2_5085 0.85 +0.7 5,868,887 + Pf6N2E2_5085 0.85 -0.4 5,868,888 - Pf6N2E2_5085 0.85 +0.5 5,868,935 + Pf6N2E2_5085 0.87 +0.3 5,868,935 + Pf6N2E2_5085 0.87 +0.3 5,868,935 + Pf6N2E2_5085 0.87 -0.2 5,868,936 - Pf6N2E2_5085 0.87 +0.8 5,869,025 + Pf6N2E2_5085 0.90 +0.7 5,869,068 + -0.6 5,869,068 + -3.8 5,869,131 + -0.8 5,869,188 + -0.7 5,869,189 - +0.9 5,869,190 + +1.7 5,869,190 + -0.7 5,869,190 + +1.2 5,869,191 - +0.9 5,869,301 + -0.1 5,869,308 - +0.0 5,869,353 - +1.3 5,869,389 + -0.2 5,869,398 - -1.4 5,869,398 - -0.1 5,869,398 - -0.6 5,869,433 + +0.1 5,869,459 - -1.0 5,869,669 + +0.5 5,869,670 - +0.5 5,869,709 + +0.3 5,869,876 - Pf6N2E2_5086 0.88 -0.8 5,869,992 - +2.1 5,870,012 - -0.8 5,870,038 - +1.4 5,870,096 - +1.2 5,870,096 - -0.2 5,870,529 + Pf6N2E2_5087 0.83 +0.3 5,870,529 + Pf6N2E2_5087 0.83 -1.4 5,870,529 + Pf6N2E2_5087 0.83 +0.3 5,870,529 + Pf6N2E2_5087 0.83 -0.8 5,870,530 - Pf6N2E2_5087 0.83 +0.4 5,870,530 - Pf6N2E2_5087 0.83 +1.7 5,870,530 - Pf6N2E2_5087 0.83 -0.4 5,870,628 - -0.3 5,870,686 + +0.6 5,870,687 - -1.1 5,870,857 + Pf6N2E2_5088 0.48 +0.2 5,870,858 - Pf6N2E2_5088 0.48 -0.8
Or see this region's nucleotide sequence