Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_397 and Pf6N2E2_398 are separated by 209 nucleotides Pf6N2E2_398 and Pf6N2E2_399 overlap by 4 nucleotides Pf6N2E2_399 and Pf6N2E2_400 are separated by 108 nucleotides
Pf6N2E2_397 - Large exoproteins involved in heme utilization or adhesion, at 465,083 to 467,020
_397
Pf6N2E2_398 - FIG006045: Sigma factor, ECF subfamily, at 467,230 to 467,736
_398
Pf6N2E2_399 - Iron siderophore sensor protein, at 467,733 to 468,656
_399
Pf6N2E2_400 - Ferrichrome-iron receptor, at 468,765 to 471,185
_400
Position (kb) 467
468
469 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 466.749 kb on + strand, within Pf6N2E2_397 at 466.749 kb on + strand, within Pf6N2E2_397 at 466.749 kb on + strand, within Pf6N2E2_397 at 466.750 kb on - strand, within Pf6N2E2_397 at 466.750 kb on - strand, within Pf6N2E2_397 at 466.834 kb on + strand at 466.835 kb on - strand at 466.936 kb on + strand at 466.937 kb on - strand at 466.938 kb on + strand at 466.939 kb on - strand at 466.939 kb on - strand at 466.939 kb on - strand at 466.954 kb on + strand at 466.955 kb on - strand at 467.084 kb on - strand at 467.087 kb on + strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.108 kb on - strand at 467.486 kb on + strand, within Pf6N2E2_398 at 467.487 kb on - strand, within Pf6N2E2_398 at 467.487 kb on - strand, within Pf6N2E2_398 at 467.487 kb on - strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.684 kb on - strand, within Pf6N2E2_398 at 467.684 kb on - strand, within Pf6N2E2_398 at 467.684 kb on - strand, within Pf6N2E2_398 at 467.684 kb on - strand, within Pf6N2E2_398 at 467.685 kb on + strand, within Pf6N2E2_398 at 467.902 kb on + strand, within Pf6N2E2_399 at 467.903 kb on - strand, within Pf6N2E2_399 at 467.903 kb on - strand, within Pf6N2E2_399 at 468.030 kb on + strand, within Pf6N2E2_399 at 468.030 kb on + strand, within Pf6N2E2_399 at 468.031 kb on - strand, within Pf6N2E2_399 at 468.031 kb on - strand, within Pf6N2E2_399 at 468.674 kb on + strand at 468.693 kb on + strand at 468.936 kb on + strand at 468.936 kb on + strand at 468.937 kb on - strand at 468.937 kb on - strand at 468.990 kb on + strand at 469.118 kb on + strand, within Pf6N2E2_400 at 469.119 kb on - strand, within Pf6N2E2_400 at 469.161 kb on + strand, within Pf6N2E2_400 at 469.161 kb on + strand, within Pf6N2E2_400 at 469.248 kb on + strand, within Pf6N2E2_400 at 469.248 kb on + strand, within Pf6N2E2_400 at 469.248 kb on + strand, within Pf6N2E2_400 at 469.249 kb on - strand, within Pf6N2E2_400 at 469.249 kb on - strand, within Pf6N2E2_400 at 469.249 kb on - strand, within Pf6N2E2_400 at 469.587 kb on + strand, within Pf6N2E2_400 at 469.588 kb on - strand, within Pf6N2E2_400 at 469.588 kb on - strand, within Pf6N2E2_400
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 466,749 + Pf6N2E2_397 0.86 +0.6 466,749 + Pf6N2E2_397 0.86 +1.3 466,749 + Pf6N2E2_397 0.86 +0.1 466,750 - Pf6N2E2_397 0.86 +0.4 466,750 - Pf6N2E2_397 0.86 +0.6 466,834 + -0.1 466,835 - +0.9 466,936 + -0.1 466,937 - -1.2 466,938 + -3.5 466,939 - +1.1 466,939 - +1.2 466,939 - +0.6 466,954 + -0.5 466,955 - +0.9 467,084 - -1.5 467,087 + +0.2 467,088 - +0.5 467,088 - -0.4 467,088 - +1.1 467,088 - +0.3 467,088 - -0.5 467,088 - +1.3 467,088 - -1.0 467,108 - +0.5 467,486 + Pf6N2E2_398 0.50 +0.9 467,487 - Pf6N2E2_398 0.51 -1.4 467,487 - Pf6N2E2_398 0.51 +0.8 467,487 - Pf6N2E2_398 0.51 -1.9 467,683 + Pf6N2E2_398 0.89 -0.4 467,683 + Pf6N2E2_398 0.89 -2.2 467,683 + Pf6N2E2_398 0.89 -0.4 467,683 + Pf6N2E2_398 0.89 -1.0 467,683 + Pf6N2E2_398 0.89 -0.1 467,683 + Pf6N2E2_398 0.89 +0.2 467,684 - Pf6N2E2_398 0.90 +0.4 467,684 - Pf6N2E2_398 0.90 +0.4 467,684 - Pf6N2E2_398 0.90 +1.0 467,684 - Pf6N2E2_398 0.90 -0.4 467,685 + Pf6N2E2_398 0.90 -0.3 467,902 + Pf6N2E2_399 0.18 +2.1 467,903 - Pf6N2E2_399 0.18 +1.5 467,903 - Pf6N2E2_399 0.18 -0.1 468,030 + Pf6N2E2_399 0.32 -0.2 468,030 + Pf6N2E2_399 0.32 +0.9 468,031 - Pf6N2E2_399 0.32 +1.3 468,031 - Pf6N2E2_399 0.32 +0.5 468,674 + +0.8 468,693 + +1.9 468,936 + +0.7 468,936 + -0.4 468,937 - -0.0 468,937 - -1.2 468,990 + +2.9 469,118 + Pf6N2E2_400 0.15 -0.3 469,119 - Pf6N2E2_400 0.15 +1.9 469,161 + Pf6N2E2_400 0.16 -1.0 469,161 + Pf6N2E2_400 0.16 +0.3 469,248 + Pf6N2E2_400 0.20 -0.6 469,248 + Pf6N2E2_400 0.20 +0.5 469,248 + Pf6N2E2_400 0.20 +1.1 469,249 - Pf6N2E2_400 0.20 +0.6 469,249 - Pf6N2E2_400 0.20 -0.5 469,249 - Pf6N2E2_400 0.20 +0.1 469,587 + Pf6N2E2_400 0.34 -0.8 469,588 - Pf6N2E2_400 0.34 +1.0 469,588 - Pf6N2E2_400 0.34 -1.1
Or see this region's nucleotide sequence