Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3978

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3977 and Pf6N2E2_3978 are separated by 328 nucleotidesPf6N2E2_3978 and Pf6N2E2_3979 are separated by 19 nucleotides Pf6N2E2_3977 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 4,626,216 to 4,627,127 _3977 Pf6N2E2_3978 - Type I secretion system, membrane fusion protein LapC, at 4,627,456 to 4,628,793 _3978 Pf6N2E2_3979 - Type I secretion system ATPase, LssB family LapB, at 4,628,813 to 4,630,978 _3979 Position (kb) 4627 4628 4629Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4626.589 kb on + strand, within Pf6N2E2_3977at 4626.589 kb on + strand, within Pf6N2E2_3977at 4626.589 kb on + strand, within Pf6N2E2_3977at 4626.742 kb on + strand, within Pf6N2E2_3977at 4626.742 kb on + strand, within Pf6N2E2_3977at 4626.743 kb on - strand, within Pf6N2E2_3977at 4626.743 kb on - strand, within Pf6N2E2_3977at 4626.743 kb on - strand, within Pf6N2E2_3977at 4626.743 kb on - strand, within Pf6N2E2_3977at 4626.743 kb on - strand, within Pf6N2E2_3977at 4626.917 kb on + strand, within Pf6N2E2_3977at 4627.111 kb on + strandat 4627.111 kb on + strandat 4627.112 kb on - strandat 4627.127 kb on + strandat 4627.127 kb on + strandat 4627.127 kb on + strandat 4627.127 kb on + strandat 4627.127 kb on + strandat 4627.127 kb on + strandat 4627.128 kb on - strandat 4627.128 kb on - strandat 4627.128 kb on - strandat 4627.128 kb on - strandat 4627.128 kb on - strandat 4627.128 kb on - strandat 4627.128 kb on - strandat 4627.128 kb on - strandat 4627.233 kb on + strandat 4627.234 kb on - strandat 4627.234 kb on - strandat 4627.234 kb on - strandat 4627.254 kb on + strandat 4627.255 kb on - strandat 4627.259 kb on + strandat 4627.428 kb on + strandat 4627.457 kb on + strandat 4627.508 kb on + strandat 4627.508 kb on + strandat 4627.508 kb on + strandat 4627.508 kb on + strandat 4627.508 kb on + strandat 4627.509 kb on - strandat 4627.628 kb on + strand, within Pf6N2E2_3978at 4627.628 kb on + strand, within Pf6N2E2_3978at 4627.628 kb on + strand, within Pf6N2E2_3978at 4627.628 kb on + strand, within Pf6N2E2_3978at 4627.628 kb on + strand, within Pf6N2E2_3978at 4627.628 kb on + strand, within Pf6N2E2_3978at 4627.629 kb on - strand, within Pf6N2E2_3978at 4627.629 kb on - strand, within Pf6N2E2_3978at 4627.629 kb on - strand, within Pf6N2E2_3978at 4627.629 kb on - strand, within Pf6N2E2_3978at 4627.629 kb on - strand, within Pf6N2E2_3978at 4627.629 kb on - strand, within Pf6N2E2_3978at 4627.629 kb on - strand, within Pf6N2E2_3978at 4627.629 kb on - strand, within Pf6N2E2_3978at 4627.629 kb on - strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.631 kb on + strand, within Pf6N2E2_3978at 4627.632 kb on - strand, within Pf6N2E2_3978at 4627.632 kb on - strand, within Pf6N2E2_3978at 4627.632 kb on - strand, within Pf6N2E2_3978at 4627.632 kb on - strand, within Pf6N2E2_3978at 4627.635 kb on + strand, within Pf6N2E2_3978at 4627.636 kb on - strand, within Pf6N2E2_3978at 4627.636 kb on - strand, within Pf6N2E2_3978at 4627.636 kb on - strand, within Pf6N2E2_3978at 4627.636 kb on - strand, within Pf6N2E2_3978at 4627.636 kb on - strand, within Pf6N2E2_3978at 4627.636 kb on - strand, within Pf6N2E2_3978at 4627.703 kb on + strand, within Pf6N2E2_3978at 4627.704 kb on - strand, within Pf6N2E2_3978at 4627.704 kb on - strand, within Pf6N2E2_3978at 4627.704 kb on - strand, within Pf6N2E2_3978at 4627.704 kb on - strand, within Pf6N2E2_3978at 4627.712 kb on + strand, within Pf6N2E2_3978at 4627.719 kb on - strand, within Pf6N2E2_3978at 4628.220 kb on - strand, within Pf6N2E2_3978at 4628.324 kb on + strand, within Pf6N2E2_3978at 4628.324 kb on + strand, within Pf6N2E2_3978at 4628.324 kb on + strand, within Pf6N2E2_3978at 4628.325 kb on - strand, within Pf6N2E2_3978at 4628.325 kb on - strand, within Pf6N2E2_3978at 4628.325 kb on - strand, within Pf6N2E2_3978at 4628.814 kb on + strandat 4628.814 kb on + strandat 4628.814 kb on + strandat 4628.814 kb on + strandat 4628.814 kb on + strandat 4628.814 kb on + strandat 4628.815 kb on - strandat 4628.815 kb on - strandat 4628.815 kb on - strandat 4628.815 kb on - strandat 4629.282 kb on + strand, within Pf6N2E2_3979at 4629.282 kb on + strand, within Pf6N2E2_3979at 4629.282 kb on + strand, within Pf6N2E2_3979at 4629.283 kb on - strand, within Pf6N2E2_3979at 4629.294 kb on + strand, within Pf6N2E2_3979at 4629.295 kb on - strand, within Pf6N2E2_3979at 4629.295 kb on - strand, within Pf6N2E2_3979at 4629.341 kb on + strand, within Pf6N2E2_3979at 4629.341 kb on + strand, within Pf6N2E2_3979at 4629.367 kb on - strand, within Pf6N2E2_3979at 4629.687 kb on + strand, within Pf6N2E2_3979at 4629.687 kb on + strand, within Pf6N2E2_3979at 4629.687 kb on + strand, within Pf6N2E2_3979at 4629.687 kb on + strand, within Pf6N2E2_3979at 4629.687 kb on + strand, within Pf6N2E2_3979at 4629.687 kb on + strand, within Pf6N2E2_3979at 4629.688 kb on - strand, within Pf6N2E2_3979at 4629.688 kb on - strand, within Pf6N2E2_3979at 4629.688 kb on - strand, within Pf6N2E2_3979at 4629.688 kb on - strand, within Pf6N2E2_3979at 4629.688 kb on - strand, within Pf6N2E2_3979at 4629.688 kb on - strand, within Pf6N2E2_3979at 4629.736 kb on - strand, within Pf6N2E2_3979at 4629.736 kb on - strand, within Pf6N2E2_3979

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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4,626,589 + Pf6N2E2_3977 0.41 -0.2
4,626,589 + Pf6N2E2_3977 0.41 -0.3
4,626,589 + Pf6N2E2_3977 0.41 -1.3
4,626,742 + Pf6N2E2_3977 0.58 +0.8
4,626,742 + Pf6N2E2_3977 0.58 +0.6
4,626,743 - Pf6N2E2_3977 0.58 +0.6
4,626,743 - Pf6N2E2_3977 0.58 -2.0
4,626,743 - Pf6N2E2_3977 0.58 -0.1
4,626,743 - Pf6N2E2_3977 0.58 +0.4
4,626,743 - Pf6N2E2_3977 0.58 +0.6
4,626,917 + Pf6N2E2_3977 0.77 +0.5
4,627,111 + -1.5
4,627,111 + -0.1
4,627,112 - +0.2
4,627,127 + -0.4
4,627,127 + +0.9
4,627,127 + -0.3
4,627,127 + +0.0
4,627,127 + +0.8
4,627,127 + -1.4
4,627,128 - +1.3
4,627,128 - +1.3
4,627,128 - +1.8
4,627,128 - -1.2
4,627,128 - -0.2
4,627,128 - -0.5
4,627,128 - -0.6
4,627,128 - +0.6
4,627,233 + +1.4
4,627,234 - +0.0
4,627,234 - -0.4
4,627,234 - +0.8
4,627,254 + +0.6
4,627,255 - -0.4
4,627,259 + +0.9
4,627,428 + -0.2
4,627,457 + +1.7
4,627,508 + +2.8
4,627,508 + +3.2
4,627,508 + +2.9
4,627,508 + +2.1
4,627,508 + +3.3
4,627,509 - +2.6
4,627,628 + Pf6N2E2_3978 0.13 +1.9
4,627,628 + Pf6N2E2_3978 0.13 +2.4
4,627,628 + Pf6N2E2_3978 0.13 +2.3
4,627,628 + Pf6N2E2_3978 0.13 +2.6
4,627,628 + Pf6N2E2_3978 0.13 +2.6
4,627,628 + Pf6N2E2_3978 0.13 +3.0
4,627,629 - Pf6N2E2_3978 0.13 +4.0
4,627,629 - Pf6N2E2_3978 0.13 +2.7
4,627,629 - Pf6N2E2_3978 0.13 +2.2
4,627,629 - Pf6N2E2_3978 0.13 +2.0
4,627,629 - Pf6N2E2_3978 0.13 +2.2
4,627,629 - Pf6N2E2_3978 0.13 +1.6
4,627,629 - Pf6N2E2_3978 0.13 +1.4
4,627,629 - Pf6N2E2_3978 0.13 +3.1
4,627,629 - Pf6N2E2_3978 0.13 +2.0
4,627,631 + Pf6N2E2_3978 0.13 +2.6
4,627,631 + Pf6N2E2_3978 0.13 +2.8
4,627,631 + Pf6N2E2_3978 0.13 +3.0
4,627,631 + Pf6N2E2_3978 0.13 +2.8
4,627,631 + Pf6N2E2_3978 0.13 +2.7
4,627,631 + Pf6N2E2_3978 0.13 +2.0
4,627,631 + Pf6N2E2_3978 0.13 +2.0
4,627,631 + Pf6N2E2_3978 0.13 +2.4
4,627,631 + Pf6N2E2_3978 0.13 +2.4
4,627,631 + Pf6N2E2_3978 0.13 +2.2
4,627,631 + Pf6N2E2_3978 0.13 +2.6
4,627,631 + Pf6N2E2_3978 0.13 +2.5
4,627,631 + Pf6N2E2_3978 0.13 +2.2
4,627,632 - Pf6N2E2_3978 0.13 +2.3
4,627,632 - Pf6N2E2_3978 0.13 +1.5
4,627,632 - Pf6N2E2_3978 0.13 +1.9
4,627,632 - Pf6N2E2_3978 0.13 +2.3
4,627,635 + Pf6N2E2_3978 0.13 +2.8
4,627,636 - Pf6N2E2_3978 0.13 +2.2
4,627,636 - Pf6N2E2_3978 0.13 +2.0
4,627,636 - Pf6N2E2_3978 0.13 +2.0
4,627,636 - Pf6N2E2_3978 0.13 +2.0
4,627,636 - Pf6N2E2_3978 0.13 +2.7
4,627,636 - Pf6N2E2_3978 0.13 +1.9
4,627,703 + Pf6N2E2_3978 0.18 +2.9
4,627,704 - Pf6N2E2_3978 0.19 +2.3
4,627,704 - Pf6N2E2_3978 0.19 +0.6
4,627,704 - Pf6N2E2_3978 0.19 +2.3
4,627,704 - Pf6N2E2_3978 0.19 +2.8
4,627,712 + Pf6N2E2_3978 0.19 +2.6
4,627,719 - Pf6N2E2_3978 0.20 +2.4
4,628,220 - Pf6N2E2_3978 0.57 +2.7
4,628,324 + Pf6N2E2_3978 0.65 +3.1
4,628,324 + Pf6N2E2_3978 0.65 +2.8
4,628,324 + Pf6N2E2_3978 0.65 +1.8
4,628,325 - Pf6N2E2_3978 0.65 +2.6
4,628,325 - Pf6N2E2_3978 0.65 +2.5
4,628,325 - Pf6N2E2_3978 0.65 +3.2
4,628,814 + +2.8
4,628,814 + +2.6
4,628,814 + +1.1
4,628,814 + +1.1
4,628,814 + +2.7
4,628,814 + +2.1
4,628,815 - +1.9
4,628,815 - +2.5
4,628,815 - +2.1
4,628,815 - +1.6
4,629,282 + Pf6N2E2_3979 0.22 +2.8
4,629,282 + Pf6N2E2_3979 0.22 +2.6
4,629,282 + Pf6N2E2_3979 0.22 +2.4
4,629,283 - Pf6N2E2_3979 0.22 +2.9
4,629,294 + Pf6N2E2_3979 0.22 +3.1
4,629,295 - Pf6N2E2_3979 0.22 +2.3
4,629,295 - Pf6N2E2_3979 0.22 +2.2
4,629,341 + Pf6N2E2_3979 0.24 +1.6
4,629,341 + Pf6N2E2_3979 0.24 +3.1
4,629,367 - Pf6N2E2_3979 0.26 +2.3
4,629,687 + Pf6N2E2_3979 0.40 +2.7
4,629,687 + Pf6N2E2_3979 0.40 +2.4
4,629,687 + Pf6N2E2_3979 0.40 +1.8
4,629,687 + Pf6N2E2_3979 0.40 +2.1
4,629,687 + Pf6N2E2_3979 0.40 +1.8
4,629,687 + Pf6N2E2_3979 0.40 +0.1
4,629,688 - Pf6N2E2_3979 0.40 +1.9
4,629,688 - Pf6N2E2_3979 0.40 +2.3
4,629,688 - Pf6N2E2_3979 0.40 +2.2
4,629,688 - Pf6N2E2_3979 0.40 +2.4
4,629,688 - Pf6N2E2_3979 0.40 +2.1
4,629,688 - Pf6N2E2_3979 0.40 +3.2
4,629,736 - Pf6N2E2_3979 0.43 +2.1
4,629,736 - Pf6N2E2_3979 0.43 +1.9

Or see this region's nucleotide sequence