Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_356 and Pf6N2E2_357 are separated by 156 nucleotides Pf6N2E2_357 and Pf6N2E2_358 are separated by 21 nucleotides Pf6N2E2_358 and Pf6N2E2_359 are separated by 36 nucleotides
Pf6N2E2_356 - hypothetical protein, at 421,875 to 422,822
_356
Pf6N2E2_357 - hypothetical protein, at 422,979 to 423,353
_357
Pf6N2E2_358 - Haloacid dehalogenase, type II, at 423,375 to 424,043
_358
Pf6N2E2_359 - Opine oxidase subunit B, at 424,080 to 425,354
_359
Position (kb) 422
423
424 Strain fitness (log2 ratio) -2
-1
0
1
2 at 423.018 kb on + strand, within Pf6N2E2_357 at 423.023 kb on + strand, within Pf6N2E2_357 at 423.023 kb on + strand, within Pf6N2E2_357 at 423.023 kb on + strand, within Pf6N2E2_357 at 423.137 kb on + strand, within Pf6N2E2_357 at 423.137 kb on + strand, within Pf6N2E2_357 at 423.138 kb on - strand, within Pf6N2E2_357 at 423.138 kb on - strand, within Pf6N2E2_357 at 423.282 kb on + strand, within Pf6N2E2_357 at 423.282 kb on + strand, within Pf6N2E2_357 at 423.283 kb on - strand, within Pf6N2E2_357 at 423.283 kb on - strand, within Pf6N2E2_357 at 423.396 kb on + strand at 423.396 kb on + strand at 423.397 kb on - strand at 423.397 kb on - strand at 423.397 kb on - strand at 423.397 kb on - strand at 423.397 kb on - strand at 423.397 kb on - strand at 423.556 kb on - strand, within Pf6N2E2_358 at 423.633 kb on + strand, within Pf6N2E2_358 at 423.633 kb on + strand, within Pf6N2E2_358 at 423.781 kb on - strand, within Pf6N2E2_358 at 423.813 kb on + strand, within Pf6N2E2_358 at 424.095 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 423,018 + Pf6N2E2_357 0.10 +1.3 423,023 + Pf6N2E2_357 0.12 -1.2 423,023 + Pf6N2E2_357 0.12 -0.4 423,023 + Pf6N2E2_357 0.12 -0.1 423,137 + Pf6N2E2_357 0.42 -2.2 423,137 + Pf6N2E2_357 0.42 +1.7 423,138 - Pf6N2E2_357 0.42 -0.7 423,138 - Pf6N2E2_357 0.42 +0.6 423,282 + Pf6N2E2_357 0.81 +1.6 423,282 + Pf6N2E2_357 0.81 +0.6 423,283 - Pf6N2E2_357 0.81 +1.3 423,283 - Pf6N2E2_357 0.81 +1.0 423,396 + +0.9 423,396 + +1.2 423,397 - -0.4 423,397 - -1.8 423,397 - -0.5 423,397 - +0.2 423,397 - +0.7 423,397 - -1.1 423,556 - Pf6N2E2_358 0.27 -0.1 423,633 + Pf6N2E2_358 0.39 +0.3 423,633 + Pf6N2E2_358 0.39 -1.0 423,781 - Pf6N2E2_358 0.61 +1.8 423,813 + Pf6N2E2_358 0.65 +0.5 424,095 + +0.0
Or see this region's nucleotide sequence