Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2278 and Pf6N2E2_2279 are separated by 10 nucleotides Pf6N2E2_2279 and Pf6N2E2_2280 are separated by 11 nucleotides
Pf6N2E2_2278 - Transcription-repair coupling factor, at 2,693,728 to 2,697,177
_2278
Pf6N2E2_2279 - FIG00954981: hypothetical protein, at 2,697,188 to 2,697,754
_2279
Pf6N2E2_2280 - COG0553: Superfamily II DNA/RNA helicases, SNF2 family, at 2,697,766 to 2,700,459
_2280
Position (kb)
2697
2698 Strain fitness (log2 ratio)
-1
0
1
2 at 2696.305 kb on + strand, within Pf6N2E2_2278 at 2696.305 kb on + strand, within Pf6N2E2_2278 at 2696.306 kb on - strand, within Pf6N2E2_2278 at 2696.306 kb on - strand, within Pf6N2E2_2278 at 2696.464 kb on + strand, within Pf6N2E2_2278 at 2696.464 kb on + strand, within Pf6N2E2_2278 at 2696.464 kb on + strand, within Pf6N2E2_2278 at 2696.465 kb on - strand, within Pf6N2E2_2278 at 2696.470 kb on + strand, within Pf6N2E2_2278 at 2696.470 kb on + strand, within Pf6N2E2_2278 at 2696.470 kb on + strand, within Pf6N2E2_2278 at 2696.470 kb on + strand, within Pf6N2E2_2278 at 2696.470 kb on + strand, within Pf6N2E2_2278 at 2696.471 kb on - strand, within Pf6N2E2_2278 at 2696.471 kb on - strand, within Pf6N2E2_2278 at 2696.471 kb on - strand, within Pf6N2E2_2278 at 2696.471 kb on - strand, within Pf6N2E2_2278 at 2696.656 kb on + strand, within Pf6N2E2_2278 at 2696.657 kb on - strand, within Pf6N2E2_2278 at 2696.657 kb on - strand, within Pf6N2E2_2278 at 2696.657 kb on - strand, within Pf6N2E2_2278 at 2696.779 kb on + strand, within Pf6N2E2_2278 at 2696.779 kb on + strand, within Pf6N2E2_2278 at 2697.258 kb on - strand, within Pf6N2E2_2279 at 2697.419 kb on + strand, within Pf6N2E2_2279 at 2697.420 kb on - strand, within Pf6N2E2_2279 at 2697.420 kb on - strand, within Pf6N2E2_2279 at 2697.427 kb on - strand, within Pf6N2E2_2279 at 2697.640 kb on + strand, within Pf6N2E2_2279 at 2697.640 kb on + strand, within Pf6N2E2_2279 at 2698.152 kb on - strand, within Pf6N2E2_2280 at 2698.244 kb on - strand, within Pf6N2E2_2280 at 2698.276 kb on + strand, within Pf6N2E2_2280 at 2698.277 kb on - strand, within Pf6N2E2_2280 at 2698.288 kb on + strand, within Pf6N2E2_2280 at 2698.288 kb on + strand, within Pf6N2E2_2280 at 2698.288 kb on + strand, within Pf6N2E2_2280 at 2698.289 kb on - strand, within Pf6N2E2_2280 at 2698.289 kb on - strand, within Pf6N2E2_2280 at 2698.289 kb on - strand, within Pf6N2E2_2280 at 2698.289 kb on - strand, within Pf6N2E2_2280 at 2698.350 kb on - strand, within Pf6N2E2_2280 at 2698.459 kb on + strand, within Pf6N2E2_2280 at 2698.459 kb on + strand, within Pf6N2E2_2280 at 2698.460 kb on - strand, within Pf6N2E2_2280 at 2698.588 kb on + strand, within Pf6N2E2_2280
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,696,305 + Pf6N2E2_2278 0.75 +0.5 2,696,305 + Pf6N2E2_2278 0.75 +2.6 2,696,306 - Pf6N2E2_2278 0.75 +0.8 2,696,306 - Pf6N2E2_2278 0.75 +2.0 2,696,464 + Pf6N2E2_2278 0.79 +1.3 2,696,464 + Pf6N2E2_2278 0.79 +0.9 2,696,464 + Pf6N2E2_2278 0.79 +1.8 2,696,465 - Pf6N2E2_2278 0.79 +0.5 2,696,470 + Pf6N2E2_2278 0.79 +0.7 2,696,470 + Pf6N2E2_2278 0.79 -0.0 2,696,470 + Pf6N2E2_2278 0.79 +1.0 2,696,470 + Pf6N2E2_2278 0.79 +0.4 2,696,470 + Pf6N2E2_2278 0.79 +0.1 2,696,471 - Pf6N2E2_2278 0.80 -0.9 2,696,471 - Pf6N2E2_2278 0.80 -0.2 2,696,471 - Pf6N2E2_2278 0.80 -0.2 2,696,471 - Pf6N2E2_2278 0.80 -0.9 2,696,656 + Pf6N2E2_2278 0.85 +0.6 2,696,657 - Pf6N2E2_2278 0.85 +1.9 2,696,657 - Pf6N2E2_2278 0.85 +0.4 2,696,657 - Pf6N2E2_2278 0.85 +1.8 2,696,779 + Pf6N2E2_2278 0.88 +0.3 2,696,779 + Pf6N2E2_2278 0.88 +0.4 2,697,258 - Pf6N2E2_2279 0.12 +0.0 2,697,419 + Pf6N2E2_2279 0.41 +1.5 2,697,420 - Pf6N2E2_2279 0.41 +0.4 2,697,420 - Pf6N2E2_2279 0.41 +1.1 2,697,427 - Pf6N2E2_2279 0.42 -0.4 2,697,640 + Pf6N2E2_2279 0.80 +0.1 2,697,640 + Pf6N2E2_2279 0.80 +1.6 2,698,152 - Pf6N2E2_2280 0.14 -0.4 2,698,244 - Pf6N2E2_2280 0.18 +0.5 2,698,276 + Pf6N2E2_2280 0.19 +1.0 2,698,277 - Pf6N2E2_2280 0.19 +0.1 2,698,288 + Pf6N2E2_2280 0.19 -1.2 2,698,288 + Pf6N2E2_2280 0.19 +0.8 2,698,288 + Pf6N2E2_2280 0.19 +0.3 2,698,289 - Pf6N2E2_2280 0.19 +1.3 2,698,289 - Pf6N2E2_2280 0.19 +0.5 2,698,289 - Pf6N2E2_2280 0.19 +0.8 2,698,289 - Pf6N2E2_2280 0.19 -0.2 2,698,350 - Pf6N2E2_2280 0.22 +0.9 2,698,459 + Pf6N2E2_2280 0.26 -0.3 2,698,459 + Pf6N2E2_2280 0.26 +0.2 2,698,460 - Pf6N2E2_2280 0.26 +0.6 2,698,588 + Pf6N2E2_2280 0.31 -1.5
Or see this region's nucleotide sequence