Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_192 and Pf6N2E2_193 are separated by 377 nucleotides Pf6N2E2_193 and Pf6N2E2_194 overlap by 36 nucleotides Pf6N2E2_194 and Pf6N2E2_195 overlap by 4 nucleotides
Pf6N2E2_192 - hypothetical protein, at 244,676 to 246,115
_192
Pf6N2E2_193 - hypothetical protein, at 246,493 to 246,870
_193
Pf6N2E2_194 - Alcohol dehydrogenase (EC 1.1.1.1), at 246,835 to 247,569
_194
Pf6N2E2_195 - hypothetical protein, at 247,566 to 249,515
_195
Position (kb) 246
247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 245.591 kb on + strand, within Pf6N2E2_192 at 245.591 kb on + strand, within Pf6N2E2_192 at 245.591 kb on + strand, within Pf6N2E2_192 at 245.592 kb on - strand, within Pf6N2E2_192 at 245.592 kb on - strand, within Pf6N2E2_192 at 245.780 kb on - strand, within Pf6N2E2_192 at 245.833 kb on + strand, within Pf6N2E2_192 at 245.834 kb on - strand, within Pf6N2E2_192 at 245.861 kb on + strand, within Pf6N2E2_192 at 246.091 kb on - strand at 246.091 kb on - strand at 246.173 kb on + strand at 246.173 kb on + strand at 246.174 kb on - strand at 246.174 kb on - strand at 246.249 kb on - strand at 246.253 kb on + strand at 246.254 kb on - strand at 246.254 kb on - strand at 246.254 kb on - strand at 246.254 kb on - strand at 246.286 kb on + strand at 246.286 kb on + strand at 246.304 kb on + strand at 246.304 kb on + strand at 246.304 kb on + strand at 246.305 kb on - strand at 246.305 kb on - strand at 246.305 kb on - strand at 246.305 kb on - strand at 246.305 kb on - strand at 246.353 kb on - strand at 246.462 kb on + strand at 246.465 kb on + strand at 246.465 kb on + strand at 246.465 kb on + strand at 246.498 kb on + strand at 246.498 kb on + strand at 246.500 kb on + strand at 246.511 kb on + strand at 246.511 kb on + strand at 246.512 kb on - strand at 246.517 kb on - strand at 246.539 kb on + strand, within Pf6N2E2_193 at 246.539 kb on + strand, within Pf6N2E2_193 at 246.539 kb on + strand, within Pf6N2E2_193 at 246.544 kb on + strand, within Pf6N2E2_193 at 246.544 kb on + strand, within Pf6N2E2_193 at 246.772 kb on - strand, within Pf6N2E2_193 at 246.889 kb on + strand at 246.889 kb on + strand at 246.889 kb on + strand at 246.890 kb on - strand at 247.116 kb on + strand, within Pf6N2E2_194 at 247.117 kb on - strand, within Pf6N2E2_194 at 247.205 kb on + strand, within Pf6N2E2_194 at 247.215 kb on + strand, within Pf6N2E2_194 at 247.216 kb on - strand, within Pf6N2E2_194 at 247.376 kb on - strand, within Pf6N2E2_194 at 247.376 kb on - strand, within Pf6N2E2_194 at 247.376 kb on - strand, within Pf6N2E2_194 at 247.376 kb on - strand, within Pf6N2E2_194 at 247.645 kb on + strand at 247.652 kb on - strand at 247.652 kb on - strand at 247.751 kb on + strand at 247.861 kb on + strand, within Pf6N2E2_195 at 247.861 kb on + strand, within Pf6N2E2_195 at 247.861 kb on + strand, within Pf6N2E2_195 at 247.861 kb on + strand, within Pf6N2E2_195 at 247.861 kb on + strand, within Pf6N2E2_195 at 247.861 kb on + strand, within Pf6N2E2_195 at 247.861 kb on + strand, within Pf6N2E2_195 at 247.861 kb on + strand, within Pf6N2E2_195 at 247.861 kb on + strand, within Pf6N2E2_195 at 247.861 kb on + strand, within Pf6N2E2_195 at 247.862 kb on - strand, within Pf6N2E2_195 at 247.862 kb on - strand, within Pf6N2E2_195 at 247.862 kb on - strand, within Pf6N2E2_195 at 247.862 kb on - strand, within Pf6N2E2_195
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 245,591 + Pf6N2E2_192 0.64 +0.8 245,591 + Pf6N2E2_192 0.64 +0.1 245,591 + Pf6N2E2_192 0.64 +0.3 245,592 - Pf6N2E2_192 0.64 +0.7 245,592 - Pf6N2E2_192 0.64 +0.2 245,780 - Pf6N2E2_192 0.77 +0.0 245,833 + Pf6N2E2_192 0.80 -0.6 245,834 - Pf6N2E2_192 0.80 -0.0 245,861 + Pf6N2E2_192 0.82 +2.2 246,091 - +1.7 246,091 - +0.9 246,173 + -0.7 246,173 + -0.3 246,174 - -0.5 246,174 - +0.6 246,249 - -0.4 246,253 + +0.4 246,254 - -0.7 246,254 - -0.3 246,254 - +1.1 246,254 - -0.9 246,286 + +0.1 246,286 + -0.1 246,304 + -0.3 246,304 + -1.7 246,304 + -0.0 246,305 - +0.3 246,305 - -0.2 246,305 - +0.1 246,305 - +1.2 246,305 - -0.0 246,353 - +0.9 246,462 + -0.4 246,465 + +1.9 246,465 + -0.3 246,465 + -0.1 246,498 + -0.7 246,498 + +1.3 246,500 + -0.9 246,511 + -0.2 246,511 + -0.8 246,512 - -0.6 246,517 - +1.0 246,539 + Pf6N2E2_193 0.12 +0.1 246,539 + Pf6N2E2_193 0.12 -1.2 246,539 + Pf6N2E2_193 0.12 -1.9 246,544 + Pf6N2E2_193 0.13 -1.1 246,544 + Pf6N2E2_193 0.13 -0.7 246,772 - Pf6N2E2_193 0.74 -1.1 246,889 + +0.9 246,889 + +0.5 246,889 + +1.2 246,890 - +0.2 247,116 + Pf6N2E2_194 0.38 -0.1 247,117 - Pf6N2E2_194 0.38 -0.9 247,205 + Pf6N2E2_194 0.50 -0.4 247,215 + Pf6N2E2_194 0.52 -0.5 247,216 - Pf6N2E2_194 0.52 +0.7 247,376 - Pf6N2E2_194 0.74 +0.3 247,376 - Pf6N2E2_194 0.74 -0.0 247,376 - Pf6N2E2_194 0.74 -0.7 247,376 - Pf6N2E2_194 0.74 -0.5 247,645 + -1.1 247,652 - +0.7 247,652 - +1.0 247,751 + -0.1 247,861 + Pf6N2E2_195 0.15 -2.6 247,861 + Pf6N2E2_195 0.15 -0.2 247,861 + Pf6N2E2_195 0.15 +0.7 247,861 + Pf6N2E2_195 0.15 -2.2 247,861 + Pf6N2E2_195 0.15 -2.0 247,861 + Pf6N2E2_195 0.15 -0.2 247,861 + Pf6N2E2_195 0.15 -0.3 247,861 + Pf6N2E2_195 0.15 +0.1 247,861 + Pf6N2E2_195 0.15 -0.3 247,861 + Pf6N2E2_195 0.15 +0.1 247,862 - Pf6N2E2_195 0.15 +0.8 247,862 - Pf6N2E2_195 0.15 +0.8 247,862 - Pf6N2E2_195 0.15 +0.8 247,862 - Pf6N2E2_195 0.15 -0.7
Or see this region's nucleotide sequence