Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1712

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1710 and Pf6N2E2_1711 are separated by 116 nucleotidesPf6N2E2_1711 and Pf6N2E2_1712 overlap by 14 nucleotidesPf6N2E2_1712 and Pf6N2E2_1713 are separated by 5 nucleotidesPf6N2E2_1713 and Pf6N2E2_1714 are separated by 3 nucleotides Pf6N2E2_1710 - FIG00953587: hypothetical protein, at 2,018,582 to 2,019,856 _1710 Pf6N2E2_1711 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 2,019,973 to 2,020,857 _1711 Pf6N2E2_1712 - Permease of the drug/metabolite transporter (DMT) superfamily, at 2,020,844 to 2,021,749 _1712 Pf6N2E2_1713 - iron-sulfur flavoprotein, at 2,021,755 to 2,022,366 _1713 Pf6N2E2_1714 - FIG01218476: hypothetical protein, at 2,022,370 to 2,023,053 _1714 Position (kb) 2020 2021 2022Strain fitness (log2 ratio) -2 -1 0 1at 2019.847 kb on + strandat 2019.847 kb on + strandat 2020.037 kb on + strandat 2020.123 kb on + strand, within Pf6N2E2_1711at 2020.123 kb on + strand, within Pf6N2E2_1711at 2020.124 kb on - strand, within Pf6N2E2_1711at 2020.399 kb on + strand, within Pf6N2E2_1711at 2020.472 kb on + strand, within Pf6N2E2_1711at 2020.473 kb on - strand, within Pf6N2E2_1711at 2020.473 kb on - strand, within Pf6N2E2_1711at 2021.118 kb on + strand, within Pf6N2E2_1712at 2021.118 kb on + strand, within Pf6N2E2_1712at 2021.119 kb on - strand, within Pf6N2E2_1712at 2021.488 kb on + strand, within Pf6N2E2_1712at 2021.488 kb on + strand, within Pf6N2E2_1712at 2021.488 kb on + strand, within Pf6N2E2_1712at 2021.518 kb on - strand, within Pf6N2E2_1712at 2022.134 kb on + strand, within Pf6N2E2_1713at 2022.407 kb on + strandat 2022.520 kb on - strand, within Pf6N2E2_1714at 2022.638 kb on + strand, within Pf6N2E2_1714at 2022.662 kb on + strand, within Pf6N2E2_1714

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,019,847 + +0.6
2,019,847 + -0.2
2,020,037 + +0.6
2,020,123 + Pf6N2E2_1711 0.17 +0.5
2,020,123 + Pf6N2E2_1711 0.17 -0.3
2,020,124 - Pf6N2E2_1711 0.17 +1.0
2,020,399 + Pf6N2E2_1711 0.48 +0.3
2,020,472 + Pf6N2E2_1711 0.56 -2.0
2,020,473 - Pf6N2E2_1711 0.56 +0.3
2,020,473 - Pf6N2E2_1711 0.56 +0.4
2,021,118 + Pf6N2E2_1712 0.30 +1.1
2,021,118 + Pf6N2E2_1712 0.30 +1.6
2,021,119 - Pf6N2E2_1712 0.30 +1.6
2,021,488 + Pf6N2E2_1712 0.71 +0.6
2,021,488 + Pf6N2E2_1712 0.71 +1.3
2,021,488 + Pf6N2E2_1712 0.71 -0.9
2,021,518 - Pf6N2E2_1712 0.74 -1.1
2,022,134 + Pf6N2E2_1713 0.62 +0.1
2,022,407 + +0.3
2,022,520 - Pf6N2E2_1714 0.22 +0.3
2,022,638 + Pf6N2E2_1714 0.39 +0.1
2,022,662 + Pf6N2E2_1714 0.43 +0.3

Or see this region's nucleotide sequence