Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1710 and Pf6N2E2_1711 are separated by 116 nucleotides Pf6N2E2_1711 and Pf6N2E2_1712 overlap by 14 nucleotides Pf6N2E2_1712 and Pf6N2E2_1713 are separated by 5 nucleotides Pf6N2E2_1713 and Pf6N2E2_1714 are separated by 3 nucleotides
Pf6N2E2_1710 - FIG00953587: hypothetical protein, at 2,018,582 to 2,019,856
_1710
Pf6N2E2_1711 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 2,019,973 to 2,020,857
_1711
Pf6N2E2_1712 - Permease of the drug/metabolite transporter (DMT) superfamily, at 2,020,844 to 2,021,749
_1712
Pf6N2E2_1713 - iron-sulfur flavoprotein, at 2,021,755 to 2,022,366
_1713
Pf6N2E2_1714 - FIG01218476: hypothetical protein, at 2,022,370 to 2,023,053
_1714
Position (kb)
2020
2021
2022 Strain fitness (log2 ratio)
-2
-1
0
1 at 2019.847 kb on + strand at 2019.847 kb on + strand at 2020.037 kb on + strand at 2020.123 kb on + strand, within Pf6N2E2_1711 at 2020.123 kb on + strand, within Pf6N2E2_1711 at 2020.124 kb on - strand, within Pf6N2E2_1711 at 2020.399 kb on + strand, within Pf6N2E2_1711 at 2020.472 kb on + strand, within Pf6N2E2_1711 at 2020.473 kb on - strand, within Pf6N2E2_1711 at 2020.473 kb on - strand, within Pf6N2E2_1711 at 2021.118 kb on + strand, within Pf6N2E2_1712 at 2021.118 kb on + strand, within Pf6N2E2_1712 at 2021.119 kb on - strand, within Pf6N2E2_1712 at 2021.488 kb on + strand, within Pf6N2E2_1712 at 2021.488 kb on + strand, within Pf6N2E2_1712 at 2021.488 kb on + strand, within Pf6N2E2_1712 at 2021.518 kb on - strand, within Pf6N2E2_1712 at 2022.134 kb on + strand, within Pf6N2E2_1713 at 2022.407 kb on + strand at 2022.520 kb on - strand, within Pf6N2E2_1714 at 2022.638 kb on + strand, within Pf6N2E2_1714 at 2022.662 kb on + strand, within Pf6N2E2_1714
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,019,847 + +0.6 2,019,847 + -0.2 2,020,037 + +0.6 2,020,123 + Pf6N2E2_1711 0.17 +0.5 2,020,123 + Pf6N2E2_1711 0.17 -0.3 2,020,124 - Pf6N2E2_1711 0.17 +1.0 2,020,399 + Pf6N2E2_1711 0.48 +0.3 2,020,472 + Pf6N2E2_1711 0.56 -2.0 2,020,473 - Pf6N2E2_1711 0.56 +0.3 2,020,473 - Pf6N2E2_1711 0.56 +0.4 2,021,118 + Pf6N2E2_1712 0.30 +1.1 2,021,118 + Pf6N2E2_1712 0.30 +1.6 2,021,119 - Pf6N2E2_1712 0.30 +1.6 2,021,488 + Pf6N2E2_1712 0.71 +0.6 2,021,488 + Pf6N2E2_1712 0.71 +1.3 2,021,488 + Pf6N2E2_1712 0.71 -0.9 2,021,518 - Pf6N2E2_1712 0.74 -1.1 2,022,134 + Pf6N2E2_1713 0.62 +0.1 2,022,407 + +0.3 2,022,520 - Pf6N2E2_1714 0.22 +0.3 2,022,638 + Pf6N2E2_1714 0.39 +0.1 2,022,662 + Pf6N2E2_1714 0.43 +0.3
Or see this region's nucleotide sequence