Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1696 and Pf6N2E2_1697 are separated by 116 nucleotides Pf6N2E2_1697 and Pf6N2E2_1698 overlap by 4 nucleotides
Pf6N2E2_1696 - Alkanesulfonates-binding protein, at 2,004,570 to 2,005,418
_1696
Pf6N2E2_1697 - Alkanesulfonate monooxygenase (EC 1.14.14.5), at 2,005,535 to 2,006,665
_1697
Pf6N2E2_1698 - amidohydrolase 2, at 2,006,662 to 2,007,510
_1698
Position (kb)
2005
2006
2007 Strain fitness (log2 ratio)
-2
-1
0
1 at 2004.849 kb on + strand, within Pf6N2E2_1696 at 2004.850 kb on - strand, within Pf6N2E2_1696 at 2004.942 kb on + strand, within Pf6N2E2_1696 at 2005.008 kb on + strand, within Pf6N2E2_1696 at 2005.009 kb on - strand, within Pf6N2E2_1696 at 2005.416 kb on + strand at 2005.426 kb on - strand at 2005.584 kb on - strand at 2005.626 kb on - strand at 2005.626 kb on - strand at 2006.057 kb on + strand, within Pf6N2E2_1697 at 2006.114 kb on + strand, within Pf6N2E2_1697 at 2006.114 kb on + strand, within Pf6N2E2_1697 at 2006.115 kb on - strand, within Pf6N2E2_1697 at 2006.115 kb on - strand, within Pf6N2E2_1697 at 2006.115 kb on - strand, within Pf6N2E2_1697 at 2006.319 kb on - strand, within Pf6N2E2_1697 at 2006.549 kb on + strand, within Pf6N2E2_1697 at 2006.569 kb on - strand at 2006.696 kb on - strand at 2006.969 kb on + strand, within Pf6N2E2_1698 at 2006.970 kb on - strand, within Pf6N2E2_1698 at 2006.999 kb on + strand, within Pf6N2E2_1698 at 2007.101 kb on - strand, within Pf6N2E2_1698 at 2007.170 kb on - strand, within Pf6N2E2_1698 at 2007.170 kb on - strand, within Pf6N2E2_1698 at 2007.313 kb on + strand, within Pf6N2E2_1698 at 2007.313 kb on + strand, within Pf6N2E2_1698 at 2007.313 kb on + strand, within Pf6N2E2_1698 at 2007.314 kb on - strand, within Pf6N2E2_1698 at 2007.314 kb on - strand, within Pf6N2E2_1698 at 2007.314 kb on - strand, within Pf6N2E2_1698 at 2007.314 kb on - strand, within Pf6N2E2_1698 at 2007.314 kb on - strand, within Pf6N2E2_1698 at 2007.341 kb on - strand, within Pf6N2E2_1698 at 2007.548 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,004,849 + Pf6N2E2_1696 0.33 +0.3 2,004,850 - Pf6N2E2_1696 0.33 -0.2 2,004,942 + Pf6N2E2_1696 0.44 +0.2 2,005,008 + Pf6N2E2_1696 0.52 +0.1 2,005,009 - Pf6N2E2_1696 0.52 -1.2 2,005,416 + +0.2 2,005,426 - +0.6 2,005,584 - -0.2 2,005,626 - +0.7 2,005,626 - +0.6 2,006,057 + Pf6N2E2_1697 0.46 +0.3 2,006,114 + Pf6N2E2_1697 0.51 +1.0 2,006,114 + Pf6N2E2_1697 0.51 +0.6 2,006,115 - Pf6N2E2_1697 0.51 +1.5 2,006,115 - Pf6N2E2_1697 0.51 -0.2 2,006,115 - Pf6N2E2_1697 0.51 +1.0 2,006,319 - Pf6N2E2_1697 0.69 +0.1 2,006,549 + Pf6N2E2_1697 0.90 -0.4 2,006,569 - -0.9 2,006,696 - +0.7 2,006,969 + Pf6N2E2_1698 0.36 +0.9 2,006,970 - Pf6N2E2_1698 0.36 -2.4 2,006,999 + Pf6N2E2_1698 0.40 +0.1 2,007,101 - Pf6N2E2_1698 0.52 +0.2 2,007,170 - Pf6N2E2_1698 0.60 -1.5 2,007,170 - Pf6N2E2_1698 0.60 -0.3 2,007,313 + Pf6N2E2_1698 0.77 -1.1 2,007,313 + Pf6N2E2_1698 0.77 +0.6 2,007,313 + Pf6N2E2_1698 0.77 -0.1 2,007,314 - Pf6N2E2_1698 0.77 -0.2 2,007,314 - Pf6N2E2_1698 0.77 +0.4 2,007,314 - Pf6N2E2_1698 0.77 -0.0 2,007,314 - Pf6N2E2_1698 0.77 -0.4 2,007,314 - Pf6N2E2_1698 0.77 +1.2 2,007,341 - Pf6N2E2_1698 0.80 +0.3 2,007,548 + -0.1
Or see this region's nucleotide sequence