Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02235

Experiment: Mc formate, casamino free, with 5mM L-Glutamate and 5mM L-Proline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02230 and MMP_RS08940 are separated by 33 nucleotidesMMP_RS08940 and MMP_RS02235 are separated by 195 nucleotidesMMP_RS02235 and MMP_RS02240 are separated by 17 nucleotidesMMP_RS02240 and MMP_RS02245 are separated by 30 nucleotides MMP_RS02230: MMP_RS02230 - sodium-dependent transporter, at 420,466 to 421,977 _RS02230 MMP_RS08940: MMP_RS08940 - MetS family NSS transporter small subunit, at 422,011 to 422,091 _RS08940 MMP_RS02235: MMP_RS02235 - CBS domain-containing protein, at 422,287 to 423,252 _RS02235 MMP_RS02240: MMP_RS02240 - methanogenesis marker 7 protein, at 423,270 to 424,184 _RS02240 MMP_RS02245: MMP_RS02245 - hypothetical protein, at 424,215 to 424,667 _RS02245 Position (kb) 422 423 424Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 421.326 kb on - strand, within MMP_RS02230at 421.359 kb on + strand, within MMP_RS02230at 421.409 kb on - strand, within MMP_RS02230at 421.410 kb on + strand, within MMP_RS02230at 421.410 kb on + strand, within MMP_RS02230at 421.422 kb on + strand, within MMP_RS02230at 421.615 kb on - strand, within MMP_RS02230at 421.784 kb on + strand, within MMP_RS02230at 421.983 kb on - strandat 422.009 kb on - strandat 422.010 kb on + strandat 422.036 kb on - strand, within MMP_RS08940at 422.089 kb on - strandat 422.090 kb on + strandat 422.092 kb on - strandat 422.093 kb on + strandat 422.160 kb on - strandat 422.163 kb on + strandat 422.181 kb on - strandat 422.227 kb on - strandat 422.232 kb on - strandat 422.232 kb on - strandat 422.232 kb on - strandat 422.232 kb on - strandat 422.232 kb on - strandat 422.233 kb on + strandat 422.233 kb on + strandat 422.234 kb on - strandat 422.235 kb on + strandat 422.241 kb on - strandat 422.291 kb on - strandat 422.292 kb on + strandat 422.321 kb on - strandat 422.323 kb on - strandat 422.323 kb on - strandat 422.324 kb on + strandat 422.324 kb on + strandat 422.325 kb on - strandat 422.325 kb on - strandat 422.325 kb on - strandat 422.326 kb on + strandat 422.326 kb on + strandat 422.326 kb on + strandat 422.352 kb on - strandat 422.356 kb on - strandat 422.356 kb on - strandat 422.357 kb on + strandat 422.357 kb on + strandat 422.360 kb on - strandat 422.368 kb on - strandat 422.368 kb on - strandat 422.372 kb on - strandat 422.376 kb on - strandat 422.376 kb on - strandat 422.456 kb on - strand, within MMP_RS02235at 422.456 kb on - strand, within MMP_RS02235at 422.457 kb on + strand, within MMP_RS02235at 422.471 kb on - strand, within MMP_RS02235at 422.472 kb on + strand, within MMP_RS02235at 422.518 kb on + strand, within MMP_RS02235at 422.554 kb on + strand, within MMP_RS02235at 422.623 kb on + strand, within MMP_RS02235at 422.651 kb on - strand, within MMP_RS02235at 422.794 kb on + strand, within MMP_RS02235at 422.829 kb on - strand, within MMP_RS02235at 422.863 kb on - strand, within MMP_RS02235at 422.938 kb on - strand, within MMP_RS02235at 422.938 kb on - strand, within MMP_RS02235at 423.055 kb on + strand, within MMP_RS02235at 423.071 kb on - strand, within MMP_RS02235at 423.076 kb on + strand, within MMP_RS02235at 423.090 kb on + strand, within MMP_RS02235at 423.126 kb on + strand, within MMP_RS02235at 423.126 kb on + strand, within MMP_RS02235at 423.191 kb on - strandat 423.282 kb on + strandat 423.282 kb on + strandat 423.284 kb on - strandat 423.285 kb on + strandat 423.445 kb on + strand, within MMP_RS02240at 423.777 kb on - strand, within MMP_RS02240at 423.885 kb on + strand, within MMP_RS02240at 423.959 kb on + strand, within MMP_RS02240at 423.959 kb on + strand, within MMP_RS02240at 424.077 kb on - strand, within MMP_RS02240at 424.098 kb on - strandat 424.099 kb on + strandat 424.104 kb on + strandat 424.183 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 5mM L-Glutamate and 5mM L-Proline
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421,326 - MMP_RS02230 0.57 -0.4
421,359 + MMP_RS02230 0.59 +0.9
421,409 - MMP_RS02230 0.62 -0.4
421,410 + MMP_RS02230 0.62 -0.5
421,410 + MMP_RS02230 0.62 -1.0
421,422 + MMP_RS02230 0.63 +1.0
421,615 - MMP_RS02230 0.76 +0.4
421,784 + MMP_RS02230 0.87 +1.3
421,983 - -0.4
422,009 - -0.2
422,010 + +0.4
422,036 - MMP_RS08940 0.31 -1.1
422,089 - +0.2
422,090 + -0.5
422,092 - +0.2
422,093 + +0.1
422,160 - -2.6
422,163 + +0.5
422,181 - +0.8
422,227 - +0.1
422,232 - -3.2
422,232 - -1.3
422,232 - -0.6
422,232 - -0.5
422,232 - -0.6
422,233 + -1.7
422,233 + -0.4
422,234 - -2.1
422,235 + -0.2
422,241 - -1.0
422,291 - -1.3
422,292 + -2.3
422,321 - -4.3
422,323 - -0.0
422,323 - -3.0
422,324 + -2.2
422,324 + +0.1
422,325 - -1.4
422,325 - -1.5
422,325 - -1.9
422,326 + -0.4
422,326 + -0.7
422,326 + -0.8
422,352 - -0.8
422,356 - -0.4
422,356 - -0.2
422,357 + -0.0
422,357 + +0.1
422,360 - -1.5
422,368 - +0.1
422,368 - -1.2
422,372 - -0.0
422,376 - -1.0
422,376 - -1.2
422,456 - MMP_RS02235 0.17 -0.8
422,456 - MMP_RS02235 0.17 -0.4
422,457 + MMP_RS02235 0.18 -5.5
422,471 - MMP_RS02235 0.19 +0.6
422,472 + MMP_RS02235 0.19 -0.4
422,518 + MMP_RS02235 0.24 -0.6
422,554 + MMP_RS02235 0.28 -1.1
422,623 + MMP_RS02235 0.35 -0.4
422,651 - MMP_RS02235 0.38 +0.5
422,794 + MMP_RS02235 0.52 -2.1
422,829 - MMP_RS02235 0.56 -2.1
422,863 - MMP_RS02235 0.60 -2.9
422,938 - MMP_RS02235 0.67 -1.9
422,938 - MMP_RS02235 0.67 -1.1
423,055 + MMP_RS02235 0.80 -1.1
423,071 - MMP_RS02235 0.81 +0.5
423,076 + MMP_RS02235 0.82 -0.6
423,090 + MMP_RS02235 0.83 -2.5
423,126 + MMP_RS02235 0.87 -0.6
423,126 + MMP_RS02235 0.87 -3.3
423,191 - -1.6
423,282 + -0.1
423,282 + +0.2
423,284 - -1.2
423,285 + -3.8
423,445 + MMP_RS02240 0.19 -3.0
423,777 - MMP_RS02240 0.55 -1.2
423,885 + MMP_RS02240 0.67 -1.4
423,959 + MMP_RS02240 0.75 -1.7
423,959 + MMP_RS02240 0.75 -1.5
424,077 - MMP_RS02240 0.88 +0.3
424,098 - -3.1
424,099 + -1.7
424,104 + -1.0
424,183 + -0.4

Or see this region's nucleotide sequence