Experiment: Mc formate, casamino free, with 5mM L-Glutamate and 5mM L-Proline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00955 and MMP_RS00960 are separated by 3 nucleotides MMP_RS00960 and MMP_RS00965 are separated by 2 nucleotides MMP_RS00965 and MMP_RS00970 are separated by 81 nucleotides
MMP_RS00955: MMP_RS00955 - coenzyme gamma-F420-2:alpha-L-glutamate ligase, at 178,521 to 179,378
_RS00955
MMP_RS00960: MMP_RS00960 - iron export ABC transporter permease subunit FetB, at 179,382 to 180,128
_RS00960
MMP_RS00965: MMP_RS00965 - hypothetical protein, at 180,131 to 180,415
_RS00965
MMP_RS00970: MMP_RS00970 - coenzyme F430 synthase, at 180,497 to 181,699
_RS00970
Position (kb) 180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 179.143 kb on - strand, within MMP_RS00955 at 179.143 kb on - strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.146 kb on + strand, within MMP_RS00955 at 179.229 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.285 kb on + strand, within MMP_RS00955 at 179.386 kb on - strand at 179.438 kb on + strand at 179.573 kb on - strand, within MMP_RS00960 at 179.740 kb on + strand, within MMP_RS00960 at 179.889 kb on + strand, within MMP_RS00960 at 179.959 kb on - strand, within MMP_RS00960 at 180.064 kb on - strand at 180.382 kb on - strand, within MMP_RS00965 at 180.382 kb on - strand, within MMP_RS00965 at 180.385 kb on - strand, within MMP_RS00965 at 180.407 kb on - strand at 180.407 kb on - strand at 180.408 kb on + strand at 180.420 kb on + strand at 180.447 kb on + strand at 180.632 kb on + strand at 180.924 kb on - strand at 180.933 kb on - strand at 181.086 kb on - strand at 181.086 kb on - strand at 181.149 kb on - strand at 181.151 kb on - strand at 181.152 kb on + strand at 181.291 kb on + strand at 181.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 5mM L-Glutamate and 5mM L-Proline remove 179,143 - MMP_RS00955 0.72 +0.8 179,143 - MMP_RS00955 0.72 +1.4 179,144 + MMP_RS00955 0.73 +0.1 179,144 + MMP_RS00955 0.73 +0.0 179,144 + MMP_RS00955 0.73 +1.1 179,144 + MMP_RS00955 0.73 +0.7 179,146 + MMP_RS00955 0.73 +0.2 179,229 - MMP_RS00955 0.83 +0.2 179,231 - MMP_RS00955 0.83 +0.8 179,231 - MMP_RS00955 0.83 -0.1 179,232 + MMP_RS00955 0.83 -0.3 179,232 + MMP_RS00955 0.83 +0.2 179,285 + MMP_RS00955 0.89 -0.0 179,386 - +0.0 179,438 + +0.4 179,573 - MMP_RS00960 0.26 +0.6 179,740 + MMP_RS00960 0.48 +0.9 179,889 + MMP_RS00960 0.68 +0.3 179,959 - MMP_RS00960 0.77 -0.9 180,064 - +0.9 180,382 - MMP_RS00965 0.88 +0.5 180,382 - MMP_RS00965 0.88 -2.2 180,385 - MMP_RS00965 0.89 -0.4 180,407 - +0.1 180,407 - -0.6 180,408 + +0.2 180,420 + +0.7 180,447 + -0.4 180,632 + -1.7 180,924 - -0.0 180,933 - -0.9 181,086 - -2.9 181,086 - -0.2 181,149 - -1.0 181,151 - -1.7 181,152 + -1.4 181,291 + -0.1 181,406 + -0.9
Or see this region's nucleotide sequence