Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_771 and HP15_772 are separated by 21 nucleotides HP15_772 and HP15_773 overlap by 17 nucleotides HP15_773 and HP15_774 are separated by 39 nucleotides HP15_774 and HP15_775 are separated by 56 nucleotides HP15_775 and HP15_776 are separated by 15 nucleotides
HP15_771: HP15_771 - glycine cleavage T-protein (aminomethyl transferase), at 782,092 to 783,087
_771
HP15_772: HP15_772 - conserved hypothetical protein, secreted, at 783,109 to 783,573
_772
HP15_773: HP15_773 - conserved hypothetical protein, at 783,557 to 783,829
_773
HP15_774: HP15_774 - L-aspartate oxidase, at 783,869 to 785,494
_774
HP15_775: HP15_775 - RNA polymerase sigma-70 RpoE type, at 785,551 to 786,294
_775
HP15_776: HP15_776 - sigma factor algU negative regulatory protein MucA, at 786,310 to 786,870
_776
Position (kb) 783
784
785
786 Strain fitness (log2 ratio) -2
-1
0
1 at 783.138 kb on + strand at 783.306 kb on + strand, within HP15_772 at 783.306 kb on + strand, within HP15_772 at 783.314 kb on - strand, within HP15_772 at 783.382 kb on + strand, within HP15_772 at 783.390 kb on - strand, within HP15_772 at 783.412 kb on - strand, within HP15_772 at 783.417 kb on - strand, within HP15_772 at 783.417 kb on - strand, within HP15_772 at 783.551 kb on - strand at 783.564 kb on + strand at 783.839 kb on - strand at 783.915 kb on - strand at 783.917 kb on - strand at 783.998 kb on - strand at 784.298 kb on + strand, within HP15_774 at 784.298 kb on + strand, within HP15_774 at 784.306 kb on - strand, within HP15_774 at 784.344 kb on + strand, within HP15_774 at 784.388 kb on - strand, within HP15_774 at 784.436 kb on + strand, within HP15_774 at 784.436 kb on + strand, within HP15_774 at 784.501 kb on - strand, within HP15_774 at 784.706 kb on - strand, within HP15_774 at 785.027 kb on - strand, within HP15_774 at 785.057 kb on + strand, within HP15_774 at 785.070 kb on - strand, within HP15_774 at 785.110 kb on + strand, within HP15_774 at 785.154 kb on + strand, within HP15_774 at 785.236 kb on - strand, within HP15_774 at 785.254 kb on - strand, within HP15_774 at 785.254 kb on - strand, within HP15_774 at 785.306 kb on + strand, within HP15_774 at 785.390 kb on - strand at 785.526 kb on - strand at 785.557 kb on - strand at 785.569 kb on + strand at 785.586 kb on - strand at 785.631 kb on + strand, within HP15_775 at 785.663 kb on + strand, within HP15_775 at 785.681 kb on - strand, within HP15_775 at 785.854 kb on + strand, within HP15_775 at 785.924 kb on + strand, within HP15_775 at 786.002 kb on - strand, within HP15_775 at 786.035 kb on + strand, within HP15_775 at 786.043 kb on - strand, within HP15_775 at 786.077 kb on + strand, within HP15_775 at 786.201 kb on - strand, within HP15_775 at 786.220 kb on - strand at 786.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 783,138 + -0.5 783,306 + HP15_772 0.42 +0.5 783,306 + HP15_772 0.42 -0.0 783,314 - HP15_772 0.44 -0.0 783,382 + HP15_772 0.59 -0.2 783,390 - HP15_772 0.60 -0.1 783,412 - HP15_772 0.65 +0.0 783,417 - HP15_772 0.66 -0.1 783,417 - HP15_772 0.66 +0.2 783,551 - +0.1 783,564 + +0.5 783,839 - -0.1 783,915 - -0.6 783,917 - +0.3 783,998 - -1.0 784,298 + HP15_774 0.26 -0.8 784,298 + HP15_774 0.26 -0.0 784,306 - HP15_774 0.27 -0.7 784,344 + HP15_774 0.29 -0.3 784,388 - HP15_774 0.32 -0.7 784,436 + HP15_774 0.35 -1.0 784,436 + HP15_774 0.35 -1.7 784,501 - HP15_774 0.39 -0.2 784,706 - HP15_774 0.51 -0.6 785,027 - HP15_774 0.71 -1.3 785,057 + HP15_774 0.73 -0.3 785,070 - HP15_774 0.74 +0.4 785,110 + HP15_774 0.76 -0.4 785,154 + HP15_774 0.79 +1.0 785,236 - HP15_774 0.84 +1.3 785,254 - HP15_774 0.85 -0.5 785,254 - HP15_774 0.85 -0.7 785,306 + HP15_774 0.88 -2.1 785,390 - -0.2 785,526 - -0.7 785,557 - -0.5 785,569 + -0.5 785,586 - +0.4 785,631 + HP15_775 0.11 +1.3 785,663 + HP15_775 0.15 -0.8 785,681 - HP15_775 0.17 +0.6 785,854 + HP15_775 0.41 +0.4 785,924 + HP15_775 0.50 -0.1 786,002 - HP15_775 0.61 +0.4 786,035 + HP15_775 0.65 -0.7 786,043 - HP15_775 0.66 +0.4 786,077 + HP15_775 0.71 -0.3 786,201 - HP15_775 0.87 +0.6 786,220 - +0.1 786,251 - +0.4
Or see this region's nucleotide sequence